Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq17 223 4e-53 seq2 93.3 5e-14 >seq17 Length=584494 Score = 223 bits (246), Expect = 4e-53 Identities = 1053/1653 (64%), Gaps = 56/1653 (3%) Strand=Plus/Plus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| || || || || || |||||| ||||| | ||||| || | | ||| Sbjct 102972 TAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTTG 103031 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 | ||||| | || || ||||| |||||| || |||| | |||| Sbjct 103032 CTCACCGTCGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGGCAGATGTAGGCACCA 103091 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 |||||||| |||| || | | |||||| | |||||||| || || |||||| Sbjct 103092 CGATCAGCTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTTTTGTACTTT 103151 Query 109594 TTCTTGATATCATCGGGAAT-GTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCAT 109652 | |||||| |||| ||||| | | | | ||||| | |||||||| | | || || Sbjct 103152 TCCTTGATTGCATCAGGAATCGAGCGCACT-TTTTGCACCGAGCCACCGTCATGCAAGAT 103210 Query 109653 GAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTT 109712 | | || ||| | ||||| ||| | | |||| || | | || | ||| Sbjct 103211 TTGGTTGCGCACCTCAGGTGTCCAGATACCAAGTTCGATGAGCTCCTTCATGAGGTACTT 103270 Query 109713 GTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGG 109772 |||||| | |||||||||||| || ||| ||| ||| ||||| | |||| | || Sbjct 103271 GTTGACGATCGTAAATTCACCAGCGAGCACGCGACGGTTGTACATGTTGGACGTGAATGG 103330 Query 109773 TTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCAT 109832 || | | ||||| ||||| | ||| || ||||| || || || |||||||| |||| Sbjct 103331 CTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAA 103390 Query 109833 GAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATT----GCGTCCCAAT 109888 | || ||| || | ||| | |||| | || || || || |||||| Sbjct 103391 CAACAGGGAGTTGCGCACACCATG----TTTAGCGACTTGAGCTTTCAATGCAGCCCAAT 103446 Query 109889 CATAACGACCACTAAATTTAGTCTCACCATCCCACATATC----TGGTTGAAGTACACCC 109944 | | ||||| | ||| |||| ||||||||| ||| || | | | Sbjct 103447 CCCAGAGACCAGATGTTGGAGTGACACC---CCACATATCAAACTGGAAGATGCCCTTGC 103503 Query 109945 TCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGAT 110004 ||| |||| || |||| | || | || |||| || | ||| || | || Sbjct 103504 TCA----CAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATA 103559 Query 110005 GAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGAC 110064 || || || | || ||| |||| || |||||||| || |||| || | Sbjct 103560 GATGCTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCT 103619 Query 110065 TCTTCACAGTCGAAGGGAAGACCACAA-AGAATAAACACATCCGCTAGACCCTGAACACC 110123 | |||| |||||||| | ||| || ||||||||| |||| || | || || ||||| Sbjct 103620 TGCTCACTTTCGAAGGGGA-ACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACC 103678 Query 110124 GAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACG---GGGTAAAA 110180 | ||| | |||||||| | ||||| || || |||| | || || | Sbjct 103679 AATACCCACAGGGCGATGTCGTAGATTAGATCGCTTGGC---TTCTGGGATCGGATAGTA 103735 Query 110181 GTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTT 110240 |||| || |||||| || ||||| | |||||| ||||||||||||| | ||| || Sbjct 103736 GTTGATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTT 103795 Query 110241 GTCGTAATCGAACGTTTTCGTCTCC-TTATTGACATATTTGGGGAGAGCAATAGACGCAA 110299 | ||| ||| | || || | |||| |||||| || ||||| ||||| | Sbjct 103796 CT-------GAAAGTTAAACACACCATTGTCGACAAATTTGGACAGTGCAATGGACGCCA 103848 Query 110300 GATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTT-- 110357 |||||||| | ||||| ||| ||||| || | | || |||||||| Sbjct 103849 AGTTGCACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTAC 103908 Query 110358 -GGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTAT 110416 ||| | || || |||||||| | ||||||||| ||| |||||||||||||| | Sbjct 103909 TGGAGCGAATAGTG---CCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCCTTGT 103965 Query 110417 AGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGG 110476 |||||||||| || || || ||||| |||| | | | |||||| ||| | || | Sbjct 103966 AGAGCATGTAGGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACCACA-ATTGT 104024 Query 110477 CG-GCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCT 110533 | || || || |||| || | || | | |||||||||||||||||| ||| Sbjct 104025 TGCGCCTTGATGGTCTTGCGG--GCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGCCT 104082 Query 110534 CAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACC 110593 | ||||| | || | || | ||||| |||| | | || ||||| || || Sbjct 104083 CGAATTCATCACCCCAGCAGTCGAACAGACCAGTCGCTTCATTAGGGCAGAAAAGACTCC 104142 Query 110594 AATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAA 110653 | | || | || || | ||||||||||| || || |||||||| || | || | Sbjct 104143 ACTCGCCGTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACA 104202 Query 110654 GGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGA 110713 | ||||| |||| ||||| ||| || || | | |||| || || | | Sbjct 104203 GATCACGTGCACGATGAAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAATA 104262 Query 110714 TATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGA---CGACCCGCCT 110770 || | ||||| || || | ||||| || | || ||||| || | ||| | | Sbjct 104263 CGTCGGCATGCCACGGCTCCAAATAGATTGCAAACGACCCCTTGCGCTTGCCACCACCTT 104322 Query 110771 GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATT 110830 | | ||| || || || ||| ||||||| || | | |||||| | ||| || | ||| Sbjct 104323 GATCAACGTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACG 104382 Query 110831 GACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAA 110890 ||||||||||| | || | || | || ||||||| ||| || || || | Sbjct 104383 TGCCATTTGTACCACGGATGTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATGCCGA 104442 Query 110891 TACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAA 110950 |||| || |||||||| || ||| || | |||| || | ||||| || |||| Sbjct 104443 TACCCCCTGCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAA 104502 Query 110951 TCGAATCTGCCTTG--TTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCC 111008 | ||||| | |||| | | |||| ||||| || ||||||| || || || || || || Sbjct 104503 TAGAATC-GTCTTGCATGGCCAATAAGAAA-CACGAAGACAGTTGTGGCCGTGGTGTACC 104560 Query 111009 CGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 || || || ||||| ||||| || || |||| Sbjct 104561 TGCGTTAAACAGTGTTGGTGTGGCGTGCGTGAA 104593 >seq2 Length=1145976 Score = 93.3 bits (102), Expect = 5e-14 Identities = 349/534 (65%), Gaps = 29/534 (5%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || |||||||| | ||| || |||||||| ||||| || | |||||||| | ||||| Sbjct 132574 TATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATCATGTCCATC 132515 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTGACCAA---CTTGTTTCAGAAGA 119324 |||||||||| || |||| ||| |||| | | ||||| | ||| || | | Sbjct 132514 CAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCATGT---AGCAAA 132458 Query 119325 CGATCGGAGACATACT-CGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATT 119383 ||||| | ||| | | | || || | ||||| ||| ||||| || || | ||| Sbjct 132457 CGATCAGC-ACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCAATCA-ATT 132400 Query 119384 ACAC-GGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGG 119442 ||| ||||| | ||| || ||| | |||||| ||| || || || | ||| Sbjct 132399 CCACAGGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCACCAATGATTT 132340 Query 119443 AGTGAATA-GTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACG---GCA 119498 ||| | || || || | || ||| | ||| || | || | | ||| Sbjct 132339 CGTGCACGCGTGACTCCGGAAGCTT-GTTG---ACGAGCTTGGAGTACATCAAGCACGCA 132284 Query 119499 AATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGC 119558 || || || | ||||||||| ||| |||||| ||||| ||| | || |||||| Sbjct 132283 AAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCAGGC 132224 Query 119559 ATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCC 119618 ||||| || | ||||| | ||| ||||||| || || || ||||||||||| ||| Sbjct 132223 ATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATTCCC 132164 Query 119619 TCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA------AGGTCGAGACTTGTCGAAC 119672 || ||| || || || || | || |||||| | || || || |||| || Sbjct 132163 TCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGCGCGA---GTCGCAC 132107 Query 119673 CACTTGAGAGCCCAGTTGGCCTT-ACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 ||||| | ||||| ||||||| | || | ||| |||| |||| |||||| Sbjct 132106 CACTTCAATGCCCAACTGGCCTTCTTGGTC-ACGCATGGGATGGTTTCGATGGC 132054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973938584000