Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq17 237 2e-57 seq2 145 9e-30 >seq17 Length=584494 Score = 237 bits (262), Expect = 2e-57 Identities = 1117/1740 (64%), Gaps = 68/1740 (4%) Strand=Plus/Plus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTG 105655 |||||||| |||||||| |||||| | ||||||||||| | ||||| || | | |||| Sbjct 102972 TAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTTG 103031 Query 105656 GACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCA 105715 || ||| || | ||| | |||| || || ||| ||| || |||| Sbjct 103032 CTCACCGTCGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGGCAGATGTAGGCACCA 103091 Query 105716 CGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGA 105775 || | || |||| ||| | || |||| |||||||||||||||||| ||| Sbjct 103092 CGATCAGCTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTTTTGTACTTT 103151 Query 105776 TTCTTGATATCATCTGGGATATCTGAG---ATATTTTGAATTGAACCCCCCGCCTTGACC 105832 | |||||| |||| || || ||| | ||||| | || || || | | || | Sbjct 103152 TCCTTGATTGCATCAGGAATC---GAGCGCACTTTTTGCACCGAGCCACC-GTCATG--C 103205 Query 105833 ATGAGATCCTT---CATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGA 105889 | || | || || || | ||| | ||||| | |||| || || | ||| Sbjct 103206 AAGATTTGGTTGCGCACCTCAGGTGTCCAGATACCAAGTTCGATGAGCTCCTTCATGAGG 103265 Query 105890 TGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTG 105949 | ||||||||| ||| ||| || || ||||| | | || ||||| | |||| Sbjct 103266 TACTTGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGGTTGTACATGTTGGACGTG 103325 Query 105950 TAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGT 106009 | || |||| | |||||||||| |||||||| || || || || || |||||||| || Sbjct 103326 AATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGC 103385 Query 106010 GCCATCAAAAGACTGTTACGAAGACCCTTTTC-----CTTGATGCGTTCCTTG-AGAACA 106063 |||| ||| || ||| || | ||| | || ||||| || ||| || || || Sbjct 103386 GCCAACAACAGGGAGTTGCGCACACCATGTTTAGCGACTTGA-GCTTTCAATGCAGCCCA 103444 Query 106064 -TCCCAGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTG-AAGCACCCCTT 106121 |||||| | || |||| | || ||||||||||||| || ||| ||||| Sbjct 103445 ATCCCAGAG--ACCAGATGTTGGAGTGACAC-CCCACATATCAAACTGGAAGATGCCCTT 103501 Query 106122 GGG-ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTC-ACA 106179 | || ||||| ||||| | || ||||| | || | | | || | ||| | | Sbjct 103502 GCTCACAGGGGAG--CCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATA 103559 Query 106180 GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGC 106239 | | || |||| || | | | |||| |||||||| || | |||| || || Sbjct 103560 GAT-GCTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGC 103618 Query 106240 TTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACC 106299 || || || || | | | | | |||||| |||| || | ||||| ||||| Sbjct 103619 TTGCTCACTTTCGAAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACC 103678 Query 106300 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG---GGATAAAA 106356 | ||| | ||| | ||||| | |||||| |||| | || | ||||| | Sbjct 103679 AATACCCACAGGGCGATGTCGTAGATTAGA---TCGCTTGGCTTCTGGGATCGGATAGTA 103735 Query 106357 ATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTT 106416 || | |||||||| ||| |||||| |||| |||||||| |||||||| | || || Sbjct 103736 GTTGATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTT 103795 Query 106417 TTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA-AGGGCGATTGATGCCA 106475 | | | | ||| | | | || |||| | |||||| || || || || |||| Sbjct 103796 CTGAAAGTTAAACACACCATTGTC------GACAAA-TTTGGACAGTGCAATGGACGCCA 103848 Query 106476 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTT-- 106533 | ||||| || || || ||||| ||||||||| | | || |||||||| Sbjct 103849 AGTTGCACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTAC 103908 Query 106534 -GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGT 106592 ||| | ||| || ||||| || | || || ||| ||||| |||||||||| Sbjct 103909 TGGAGCG---AATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCCTTGT 103965 Query 106593 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCG- 106651 ||||||||||||| || || || || |||| | | | ||| || ||||| || | Sbjct 103966 AGAGCATGTAGGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACCACA-ATTGT 104024 Query 106652 -GCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707 ||| || | |||| ||| ||| |||| || |||||||| ||||| | ||| Sbjct 104025 TGCGCCTTG----ATGGTCTTGCGGGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGC 104080 Query 106708 TTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 106766 || || || |||||| | || |||| | ||||| | || | | || ||||||||| Sbjct 104081 CTCGAATTCATCACCC-CAGCAGTCGAACAGACCAGTCGCTTCATTAGGGCAGAAAAGAC 104139 Query 106767 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 106826 ||| | || | || || ||||||||||| | ||||| ||||||| || ||| Sbjct 104140 TCCACTCGCCGTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAA 104199 Query 106827 AGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 106885 | ||||| | | || ||| ||| | ||| || || | || || |||||||| Sbjct 104200 ACAGATCACGTGCA-CGATGAAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCA 104258 Query 106886 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCA 106942 | | || || ||||| ||||| | ||||| ||| | || ||||| || | ||| Sbjct 104259 AATACGTCGGCATGCCACGGCTCCAAATAGATTGCAAACGACCCCTTGCGCTTGCCACCA 104318 Query 106943 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 107002 |||||| || || || || ||| | || || || || | ||| || | |||||| | Sbjct 104319 CCTTGATCAACGTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTG 104378 Query 107003 GATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCAT 107061 || |||||||| || || || || | || | || | | | || ||| || Sbjct 104379 GACGTGCCATTTGTACCACGGAT-GTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGAT 104437 Query 107062 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACC 107121 || |||||||| |||||||| ||||| || || | | | ||||| | || || || Sbjct 104438 GCCGATACCCCCTGCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCC 104497 Query 107122 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 107181 | || || || || | |||| | | ||| || |||| || || | |||||| Sbjct 104498 CTCAATAGAATCGTCTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGT 104557 Query 107182 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTA 107241 ||| || || || || |||||||| ||||| |||| | | ||||| | || || Sbjct 104558 ACCTGCGTTAAACAGTGTTGGTGTGGCGTGCGTGAAGAACGAGAGCGACATGTACTCATA 104617 Query 107242 TGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACAT 107301 ||||| | || | || ||||| |||||||| | || |||||||| | ||| Sbjct 104618 CGTCTCAAGCACCAGCTTGATATCTTCTTTATGGATGCCTACAGCGACACGCATGATCAT 104677 >seq2 Length=1145976 Score = 145 bits (160), Expect = 9e-30 Identities = 551/845 (65%), Gaps = 36/845 (4%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||||||||| |||||||| || | || || | ||||| Sbjct 132574 TATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATCATGTCCATC 132515 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAA---CTTGTTTGAGGAGA 117102 ||||||| || ||||| ||||| | || | || |||| | ||| || | | Sbjct 132514 CAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCATGT---AGCAAA 132458 Query 117103 CGATCCGACACATACT-CAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT 117161 ||||| | |||| | | ||||||||| ||||| | |||||||| || || | ||| Sbjct 132457 CGATCAG-CACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCAATCA-ATT 132400 Query 117162 ACAT-GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 117220 || ||||| | ||| || ||| | ||||||||| || || || | ||| Sbjct 132399 CCACAGGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCACCAATGATTT 132340 Query 117221 CGTGGATA-GT---TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG--- 117273 |||| | || | ||| || || | ||| || |||| || | || | Sbjct 132339 CGTGCACGCGTGACTCCGGAAGCTTGT---TGACG---AG-CTTGGAGTACATCAAGCAC 132287 Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | || ||||| || || |||||||| ||||| | || || Sbjct 132286 GCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCA 132227 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||||||||| | || | |||||| || || || |||||||| Sbjct 132226 GGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATT 132167 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGAGACTTTGTGTCAAA 117452 ||||| ||| |||||| || |||| || || || ||| ||| || | ||| | Sbjct 132166 CCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGC-AGCGCGCGAGTCGCA 132108 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||| |||| |||||| | |||||||| | ||||| | |||| |||||| | Sbjct 132107 CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGATGGCACGTAG 132048 Query 117513 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 117572 || || | ||| || | || || |||||| |||||||||| || || ||| Sbjct 132047 CAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGCGAGTACACTTC 131988 Query 117573 GCCATGAACCATTTCATTATGGC-AT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATC 117630 | |||| ||||| ||||| || || || |||| || ||||||| || | Sbjct 131987 GGAGTGAATGTTTTCA--ATGGCGATCTGGAATCCGTAAAAGCAGCGCGCCTCAGGCACT 131930 Query 117631 TGCACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 117690 ||||||||| ||||| | | || || ||||| |||||| ||||| Sbjct 131929 TGCACTTCACTACTGAAATTCATCGCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGCA 131870 Query 117691 AAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTT---CCAG 117747 ||||| |||| || || ||| ||||| ||| || || ||| |||| |||| Sbjct 131869 AAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCA---TCTTGACCCAG 131813 Query 117748 TCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAATTGCTCATTTGAGCCTTT 117807 || | || || | |||||| | |||||| || |||||| ||| || |||||| Sbjct 131812 TCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCAGCCTTC 131753 Query 117808 TTATA 117812 || || Sbjct 131752 TTGTA 131748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978735067200