Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2 114 2e-20 >seq2 Length=1145976 Score = 114 bits (126), Expect = 2e-20 Identities = 263/396 (66%), Gaps = 0/396 (0%) Strand=Plus/Minus Query 159388 AATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCA 159447 ||||| |||||||| || | || || ||||| || || ||||| || || ||||| Sbjct 1033026 AATGTGTGTTTGATCCCTGTATCTGCGCATGGTACCAACCCTGCCAGTGCTGTCATGGCT 1032967 Query 159448 GGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTA 159507 || ||||||||||| | || || | |||||| |||| || | ||| ||| | Sbjct 1032966 GGCATGAAAGTTGTGGTCGTAAAATCTGATGAGAATGGTAATGTGGACCGTGTCGATTTG 1032907 Query 159508 GAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCT 159567 || | || | | | | | | |||||| ||||||||||||| ||||| Sbjct 1032906 GAAGAAAAGGTCAAGAAGCACGCCAACGAACTGAGTGCGTTTATGATTACATACCCATCG 1032847 Query 159568 ACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGT 159627 || |||||| |||||| | ||||| | || ||| || | | ||| | || Sbjct 1032846 ACGTTTGGTGTGTTTGAAGAAGGCATCAAGGACATGTGTGAGCTCATCCATTCCCACGGC 1032787 Query 159628 GGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGT 159687 || || || || | || ||||| || | ||||| || ||||| | || || || Sbjct 1032786 GGGCAAGTGTACATGGACGGTGCCAACATGAATGCCCAAGTAGGATTGTGCAACCCTGGT 1032727 Query 159688 GACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGA 159747 || ||| || ||||| || || | || ||||| ||||| ||||| || || || || Sbjct 1032726 AACATTGGCGCGGATGTGTGCCACTTGAATTTACACAAGACTTTCTGCATCCCGCACGGT 1032667 Query 159748 GGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCA 159783 ||||| ||||| || || ||| |||||||||| ||| Sbjct 1032666 GGTGGTGGTCCGGGTGTGGGTTCTATTGGTGTGGCA 1032631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588049141820800