Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq78 150 4e-31 seq22 149 1e-30 seq113 109 1e-18 >seq78 Length=145407 Score = 150 bits (166), Expect = 4e-31 Identities = 150/193 (78%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||| || ||||| || | ||| || | |||||||| | ||||| || || ||||| Sbjct 113023 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 113082 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || ||||| || ||||||||||| ||||| ||||| || || |||||||||||||| ||| Sbjct 113083 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 113142 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| |||||||| |||||| || || || | ||||| || || | |||||| ||||| Sbjct 113143 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 113202 Query 195133 ACTTGCAT-TTAT 195144 | ||||| |||| Sbjct 113203 ATCTGCATCTTAT 113215 >seq22 Length=480975 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || ||||||||||||||||| | ||| | || ||||| ||||||||||| Sbjct 153575 GTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCC 153634 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || || |||||||| ||||||||||| ||||| ||||| || || || ||||| Sbjct 153635 GCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTC 153694 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| ||||| | ||||||| |||||| || | || | ||||| || ||||| || Sbjct 153695 ACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTC 153754 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 153755 TTCACGAAGATCTGCAT 153771 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || ||||||||||||||||| | ||| | || ||||| ||||||||||| Sbjct 172077 GTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCC 172018 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || || |||||||| ||||||||||| ||||| ||||| || || || ||||| Sbjct 172017 GCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTC 171958 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| ||||| | ||||||| |||||| || | || | ||||| || ||||| || Sbjct 171957 ACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTC 171898 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 171897 TTCACGAAGATCTGCAT 171881 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| ||||| || || || ||| | || | |||||||| | ||| Sbjct 153796 GTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTCCAACTG 153855 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || | || ||||| || |||||||| ||||| || ||||| ||||| Sbjct 153856 CTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCTTGGATTTT 153915 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || ||||| | |||||| ||||| || | |||| ||| || || || Sbjct 153916 TTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTTCCCCGT 153975 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | ||||| Sbjct 153976 CAACGTCTTCACAAAGATCTGCAT 153999 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| | || ||||| || ||||| ||||| ||| | || | ||||| Sbjct 154015 CAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATC 154074 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || || ||||| || ||||| || |||||||| |||||||| ||||| Sbjct 154075 CTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTC 154134 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| ||||| ||||| || || || | ||| || ||| || || | || | || Sbjct 154135 TTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGT 154194 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || || || || | ||||| Sbjct 154195 CTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 154227 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| | || ||||| || ||||| ||||| ||| | || | ||||| Sbjct 171865 CAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATC 171806 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || || ||||| || ||||| || |||||||| |||||||| ||||| Sbjct 171805 CTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTC 171746 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| ||||| ||||| || || || | ||| || ||| || || | || | || Sbjct 171745 TTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGT 171686 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || || || || | ||||| Sbjct 171685 CTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 171653 >seq113 Length=36633 Score = 109 bits (120), Expect = 1e-18 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||||||| || || ||||| || || || || ||||| ||||| ||||| Sbjct 6074 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCC 6133 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| |||||||| ||||||||||| ||||| | ||||||| || || || || || Sbjct 6134 TTGTCCTGAATTTTCTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCGACGTCGAGCGTG 6193 Query 195103 ACCGTCTTTCCTG 195115 | || || |||| Sbjct 6194 ATGGTTTTACCTG 6206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109477619734760