Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq22 116 2e-21 seq78 84.2 1e-11 >seq22 Length=480975 Score = 116 bits (128), Expect = 2e-21 Identities = 161/219 (74%), Gaps = 10/219 (5%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827 ||| |||||||| | ||| || ||||||||||| ||||| | || | | || ||| Sbjct 154015 CAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACG-TGCGACCAT 154073 Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 | || ||||| ||||| ||||| || || |||||||| ||| | || | || ||||||| Sbjct 154074 CCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGT 154133 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCA-CCGGCC---TCAACATCGACGGTT 34943 | |||||| |||||||| || ||||||| | ||| | || || || | || Sbjct 154134 CTTGAATCTTTTGTTTGAC--AT--TATCGATCGAGTCGGACGGTTCGACGTCCAATGTG 154189 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||| | ||||||||||||||||||||| Sbjct 154190 ATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 154228 Score = 116 bits (128), Expect = 2e-21 Identities = 161/219 (74%), Gaps = 10/219 (5%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827 ||| |||||||| | ||| || ||||||||||| ||||| | || | | || ||| Sbjct 171865 CAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACG-TGCGACCAT 171807 Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 | || ||||| ||||| ||||| || || |||||||| ||| | || | || ||||||| Sbjct 171806 CCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGT 171747 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCAC-CGGCC---TCAACATCGACGGTT 34943 | |||||| |||||||| || ||||||| | ||| | || || || | || Sbjct 171746 CTTGAATCTTTTGTTTGAC--AT--TATCGATCGAGTCGGACGGTTCGACGTCCAATGTG 171691 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||| | ||||||||||||||||||||| Sbjct 171690 ATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 171652 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||||||| | ||| ||| |||||||| |||||||| | || | | || | || || Sbjct 154247 ACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTCAAAG-TACGACCGTCTTC 154305 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| ||||| ||||| || | || || || || | || | || ||||| || Sbjct 154306 CAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTG 154365 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||||| || ||| | ||||| || | || || || | || ||||| || Sbjct 154366 AATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTT 154425 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| |||||||| ||||||||||| Sbjct 154426 GCCGGTGAGTGTCTTCACGAAGATCTGCAT 154455 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||||||| | ||| ||| |||||||| |||||||| | || | | || | || || Sbjct 171633 ACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTCAAAG-TACGACCGTCTTC 171575 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| ||||| ||||| || | || || || || | || | || ||||| || Sbjct 171574 CAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTG 171515 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||||| || ||| | ||||| || | || || || | || ||||| || Sbjct 171514 AATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTT 171455 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| |||||||| ||||||||||| Sbjct 171454 GCCGGTGAGTGTCTTCACGAAGATCTGCAT 171425 >seq78 Length=145407 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/195 (70%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 || || ||||| ||||||||||| | || |||| |||| || || || ||||| || Sbjct 113023 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 113082 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || |||||||| ||| | || | || |||||||| ||||| || ||||| | | Sbjct 113083 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGAC----GTT 113138 Query 34914 ATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 || || | ||| | || || || | || ||||| || ||||| ||||| || || Sbjct 113139 GTCAATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGAC 113198 Query 34970 AAAGATCTGCATATT 34984 ||||||||||| || Sbjct 113199 GAAGATCTGCATCTT 113213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632492187840