Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 8e-15 seq46 89.7 4e-12 seq4 86.0 5e-11 >seq3 Length=1043435 Score = 98.7 bits (108), Expect = 8e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 394030 ATTCATTGCAATAATTTGTGGTAGTCCCACTTCATTAAGAGCAATATTTGGATCCGAGGT 394089 |||||| ||||| | | || | || |||| || || |||| |||||||| | || Sbjct 290334 ATTCATAGCAATGGATCGCGGGACGCCAACTTGATCAATTTCAATGTTTGGATCTGCAGT 290393 Query 394090 AATAACTGTACGACCTGACATATCCACACGTTTTCCCATAAGATTTCCACGAATTCTACC 394149 ||| ||||||||| |||| | ||||||||| || ||||| || || |||||||| | || Sbjct 290394 AATGACTGTACGAGCTGAAAAATCCACACGCTTGCCCATCAGGTTGCCACGAATACGGCC 290453 Query 394150 TTCTTTACCTCGTAATCGT 394168 ||||||||| || || ||| Sbjct 290454 TTCTTTACCACGCAAACGT 290472 >seq46 Length=300357 Score = 89.7 bits (98), Expect = 4e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || ||||| || ||||| || || || ||||||||||| || ||||| || ||| Sbjct 250195 ACCGTGCCAGCGTACTTTAACGATTCGCAGCGTCAAGCTACCAAGGATGCCGGTAAGATT 250136 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || | |||| |||||||| || || |||||||| |||||||| ||||| || || Sbjct 250135 GCCGGTTTGGATGTGCTTCGTATCATTAACGAACCTACGGCTGCTGCGCTTGCGTACGG 250077 >seq4 Length=1007552 Score = 86.0 bits (94), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 || || || ||| |||| || | ||||| || | ||| ||||| || | || | Sbjct 587879 TTCTCGCCTGAAGAAATATCGGCCATGGTGTTGACGAAGATGAAGCACATCGCAGAAGGC 587938 Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 | |||||| ||||| ||||| || | || || || || || |||||||| | Sbjct 587939 TACATTGGTCGTGAAGTGTTTGATGCTGTTGTGACGGTGCCTGCTTACTTTAATGATGCT 587998 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 || ||||||||||| || |||||||| ||||| || | | || | ||||| ||| Sbjct 587999 CAGCGTCAAGCTACCAAGGATGCTGGTACCATTGCCGGTTTGACCGTGCAACGTATCATC 588058 Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || ||||| ||||||||||| |||| || || Sbjct 588059 AACGAACCGACTGCTGCTGCGATTGCCTACGG 588090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029281192337200