Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq58 181 9e-41 >seq58 Length=246340 Score = 181 bits (200), Expect = 9e-41 Identities = 403/596 (68%), Gaps = 14/596 (2%) Strand=Plus/Plus Query 29798 TCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACT 29857 |||| ||||| |||||||| |||| ||||| || ||||| || | | ||||| || | Sbjct 5808 TCTTGAGCGGCTCCACGTGGTCCAAGTAGATATGTGCGTCACCAATGACGTGGATGAAAT 5867 Query 29858 CTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGA 29917 | || | | || || ||||| || || ||| ||||| | | ||||||||||| Sbjct 5868 CACCAGCCTTCAGTCCCGTGACCTGTGCGATCGACCGTGTGAGCAAGGCGTAGCTGGCGA 5927 Query 29918 TGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 29977 | || || || || || ||||||||||| |||| | |||||| | ||| || || | Sbjct 5928 TATTGAATGGGACGCCCAGCCCCATGTCTGCCGAGCGCTGGTACATCTGGCAGCTAAGTT 5987 Query 29978 CTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCA 30037 | || | || || || ||||| | ||||||| ||||| || ||||| || Sbjct 5988 CACCATTAGCGACATAGAATTGACAAAACATGTGGCATGGAGGGAGTGCCATCTCCTTCA 6047 Query 30038 AGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGTTCCTGA-- 30094 | || || |||||||| ||| ||||||||| | ||| ||| | ||||| ||| Sbjct 6048 AATCCGCTGGATTCCAGGCTGACATGATGATGCGACGGTCGTTCGGATTTGTT-TTGAGC 6106 Query 30095 -TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT 30152 || | |||| || || |||||||| || ||| || | ||| || || ||| Sbjct 6107 TTGTGAATCACGTCG----GCGAGCTGATCGACACCCTGGCCAGTGTAATCGGCGTGCAT 6162 Query 30153 GTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30212 | ||||||| || |||||||| | |||||| ||||| || || ||||| ||||| || Sbjct 6163 ATTGGTGTACTTGGCGCCGAAATGTCGCCACTGAAACCCATATACGGGTCCAAGGTCACC 6222 Query 30213 CTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 30272 ||| | || |||| || | ||||||| | ||||| || || ||| ||||||| Sbjct 6223 AGTTTCACGGTTTTCGAGTCCAATGCTGTCCAAGTATTCTCTCGAGCCATTGCCGTCCCA 6282 Query 30273 GATCTTTACCCCCTTCTC--GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 30330 ||| | ||| || |||| | || |||| || ||| || |||| ||||||| Sbjct 6283 GATACGAATGTTCTTGTCCTGGAGTG-TC-TTGGCATTCGTGTCGCCACTGATGAACCAC 6340 Query 30331 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 || | ||| || | || | |||||| || | ||| ||||| | ||| ||||| Sbjct 6341 AGTAACTCTTCTGCAACTCCACGCCAAAACACTCGCTTCGTCGTTAAGAGCGGAAA 6396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616205592440