Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq22 136 3e-27 seq78 114 1e-20 >seq22 Length=480975 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || || || ||||| || || || ||| | || | |||| ||| Sbjct 153791 ACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTCC 153850 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || || || ||||||||||||||||| || ||||| ||||| |||||||| Sbjct 153851 AACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCTTGG 153910 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 |||||||| || ||| | || | || ||| || | ||||| || | ||| | |||||| Sbjct 153911 ATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTTC 153970 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || || || ||||| ||||||||| Sbjct 153971 CCCGTCAACGTCTTCACAAAGATCTGCATG 154000 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| ||||| ||||||||||| | ||| | | || |||| |||||||| Sbjct 153575 GTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCC 153634 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || | ||| |||||||| || ||||| ||||| || || || || || || || Sbjct 153635 GCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTC 153694 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | || ||| || | |||||| || | ||||| || ||||| || || || Sbjct 153695 ACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTC 153754 Query 101453 TTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 153755 TTCACGAAGATCTGCAT 153771 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| || || ||||| || ||| | ||| | | || |||| ||||| || Sbjct 154259 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCA 154318 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| ||||||||||||||||| || ||||| ||||| ||||| ||||| || || || Sbjct 154319 GCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTC 154378 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | | ||| |||| ||| || || | |||| || |||||||| | || Sbjct 154379 ACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTC 154438 Query 101453 TTTACAAATATCTGCATGGT 101472 || || || |||||||| || Sbjct 154439 TTCACGAAGATCTGCATTGT 154458 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| || || ||||| || ||| | ||| | | || |||| ||||| || Sbjct 171621 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCA 171562 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| ||||||||||||||||| || ||||| ||||| ||||| ||||| || || || Sbjct 171561 GCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTC 171502 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | | ||| |||| ||| || || | |||| || |||||||| | || Sbjct 171501 ACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTC 171442 Query 101453 TTTACAAATATCTGCATGGT 101472 || || || |||||||| || Sbjct 171441 TTCACGAAGATCTGCATTGT 171422 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| ||||| ||||||||||| | ||| | | || |||| |||||||| Sbjct 172077 GTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCC 172018 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || | ||| |||||||| || ||||| ||||| || || || || || || || Sbjct 172017 GCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTC 171958 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 || | || | || ||| || | |||||| || | ||||| || ||||| || || || Sbjct 171957 ACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTC 171898 Query 101453 TTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 171897 TTCACGAAGATCTGCAT 171881 >seq78 Length=145407 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 ||||| || ||||| || | | || | | |||| ||||||||||| || ||||| ||| Sbjct 113023 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 113082 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 | ||| || ||||| || ||||| ||||| || || || || ||||| || || | || Sbjct 113083 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 113142 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461 | |||| || | |||||| || || |||| || ||||| || | |||||| || || Sbjct 113143 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 113202 Query 101462 ATCTGCAT 101469 |||||||| Sbjct 113203 ATCTGCAT 113210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277047699960