Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq22 118 8e-22 seq27 89.7 4e-13 >seq22 Length=480975 Score = 118 bits (130), Expect = 8e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTT-CG 48607 || || | |||||| || ||||| ||| ||||| || || || || | | || | || Sbjct 153782 AGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTC-GCTCAACGTGCG 153840 Query 48608 ATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTC 48667 | | || ||||||||||| || || || |||| ||||||||||| | |||| || || Sbjct 153841 ACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGGAATACCTTC 153900 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||| || || ||||| || ||| | | ||| || || | |||||| |||| || Sbjct 153901 CTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGT 153960 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||| |||||||| || || ||||| |||||||| Sbjct 153961 AATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 153999 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||||||||||||| | | | ||| |||| |||| ||||||||| ||||| Sbjct 153581 TCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAA 153640 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || |||||||| | |||| || |||||||| ||||| || || || Sbjct 153641 ATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTG 153700 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | ||| || || | ||||| |||| || || || || || ||||| || || || Sbjct 153701 TCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACG 153760 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 153761 AAGATCTGCAT 153771 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||||||||||||| | | | ||| |||| |||| ||||||||| ||||| Sbjct 172071 TCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAA 172012 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || |||||||| | |||| || |||||||| ||||| || || || Sbjct 172011 ATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTG 171952 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | ||| || || | ||||| |||| || || || || || ||||| || || || Sbjct 171951 TCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACG 171892 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 171891 AAGATCTGCAT 171881 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTT-CG 48607 || ||||| ||||| || | || ||| || ||||| ||||| || | | || | || Sbjct 154010 AGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTC-GCTCAACGTGCG 154068 Query 48608 ATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTC 48667 | | || || | |||||| || ||||| || || || || ||||| | || | ||| || Sbjct 154069 ACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTC 154128 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| |||||||||||| ||| | | | || || |||| || || |||| || Sbjct 154129 CTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGT 154188 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| || || || ||||| |||||||| Sbjct 154189 GATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 154227 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTT-CG 48607 || ||||| ||||| || | || ||| || ||||| ||||| || | | || | || Sbjct 171870 AGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTC-GCTCAACGTGCG 171812 Query 48608 ATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTC 48667 | | || || | |||||| || ||||| || || || || ||||| | || | ||| || Sbjct 171811 ACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTC 171752 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| |||||||||||| ||| | | | || || |||| || || |||| || Sbjct 171751 CTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGT 171692 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| || || || ||||| |||||||| Sbjct 171691 GATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 171653 >seq27 Length=441917 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || ||||||||||| || || || ||||| || || || | || Sbjct 63548 AGACGCAACACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGG 63607 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAA 48660 |||| ||||| ||||| || ||||| ||||| ||||| ||||| | |||| Sbjct 63608 CCGTCTTCCAATTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGAGGAA 63659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936300050440