Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 149 1e-30 seq17 143 5e-29 >seq2 Length=1145976 Score = 149 bits (164), Expect = 1e-30 Identities = 553/861 (64%), Gaps = 27/861 (3%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||||||||| || ||||| |||| || ||||| | ||||| Sbjct 132575 GTATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATCATGTCCAT 132516 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || || ||||| | ||| || | | | | || | | | |||| | Sbjct 132515 CCAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCATGTAGCAAACG 132456 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 ||| || | | || ||||| | |||| || || ||||||||| || | ||| Sbjct 132455 ATCAGCACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCAATCAATTCCAC 132396 Query 48022 GGGCA---AAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || | || |||| || || |||||||| ||| ||||| || || | || | Sbjct 132395 AGGGAGCGAATCCTT---GACGAATTCCTTCTCAATCGTGACGGCGTCACCAATGATTTC 132339 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 | ||||| ||||| | | |||||| | | |||||| || | || ||| ||||| Sbjct 132338 GTGCACGCGTGACTCCGGAAGCTTGTTG---ACGAGCTTGGAGTACATCAAGCACGCAAA 132282 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 ||| | |||||| ||||| || || |||||||| | || ||||| | |||||||||||| Sbjct 132281 GTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCAGGCAT 132222 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 || ||| | || || | |||||| || | ||| || || || |||||||| ||||| Sbjct 132221 GAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATTCCCTC 132162 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCC---GAAAGAAGCGTTCTTGTCTGAGATCCA 48315 || ||||| || || | || || | | || |||| | ||| | ||| Sbjct 132161 GACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGCGCGAGTC---GCACCA 132105 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC---GGAA 48372 | ||||| |||||||| | | |||||| || || || ||||| | | || Sbjct 132104 CTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGATGGCACGTAGCAA 132045 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 | | | ||| ||| | ||| | || || | | | ||| | ||||| Sbjct 132044 GTGGTCCTT---CTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGC---GAGTACAC 131991 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 || ||||| | || || || ||||||||||| ||||| ||| | |||||| ||| Sbjct 131990 TTCGGAGTGAATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGCGCCTCAGGCAC 131931 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 |||||||| | ||| || | || || || || || |||||||| ||||| Sbjct 131930 TTGCACTTCACTACTGAAATTCATCGCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGC 131871 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 |||||| || | ||| || || | ||| ||| ||||||| ||| | |||| | Sbjct 131870 AAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCATCTTGACCCAGTC 131811 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | ||| | ||| |||| |||||| | ||||| || ||| || || || Sbjct 131810 CTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCAGCCTTCTT 131751 Query 48670 GTACATGCCCCATATGTCCGG 48690 ||||||| |||| | ||||| Sbjct 131750 GTACATGGCCCACACTTCCGG 131730 >seq17 Length=584494 Score = 143 bits (158), Expect = 5e-29 Identities = 488/747 (65%), Gaps = 30/747 (4%) Strand=Plus/Plus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 |||||| ||| || ||||| | |||||| | | | ||| | ||| || ||| | || Sbjct 103271 GTTGACGATCGTAAATTCACCAGCGAGCACGCGACGGTTGTACATGTTGGACGTGAATGG 103330 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||| ||| || || || |||| ||||| ||||| || || |||||||| |||| Sbjct 103331 CTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAA 103390 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGA--TGAGGCGCCGAAGCTCTGCCCAGTCC 213086 || || ||| | ||| || || | ||| |||| | | || ||||| ||| Sbjct 103391 CAACAGGGAGTTGCGCACACCATGTTTAGCGACTTGAGCTTTCAATGCA--GCCCAATCC 103448 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 || ||||| || || ||| |||||| |||||||| |||||||| ||| Sbjct 103449 CAGAGACCAGAT--GTTGGAGTGA--CACC--CCACATATCAAACTGGAAGATGCCCTTG 103502 Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206 ||||| ||| ||||| ||||| || ||||||| |||||| || || || || Sbjct 103503 CTCACAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGAT 103562 Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266 || | || ||| | ||||| | |||||||| || | | |||| | |||| | || | Sbjct 103563 GCTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAA-TTCTCGCGCT-T 103620 Query 213267 GGGGACGT--GAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 | || | |||||| | | |||| | ||| ||||||||| ||| || || || | Sbjct 103621 GCTCACTTTCGAAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACCAA 103680 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTCCAAGGGG-TAAAAG 213380 | || | || | |||| || ||||| ||||| || || | || || || Sbjct 103681 TACCCACAGGGCGATGTCGTAGATTAGATCGCTTGG----CTTCTGGGATCGGATAGTAG 103736 Query 213381 TTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440 ||| || |||| |||||| || || | ||| | | || |||| | | || | | Sbjct 103737 TTGATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTTC 103796 Query 213441 TCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGG 213500 | || ||||| || | | ||||| | | ||| || ||| |||| | Sbjct 103797 TGAAAGTTAAACACA------CCATTGTCGACAAATTTGGACAGTGCAATGGACGCCAAG 103850 Query 213501 TTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTG 213560 ||||| || || || || | | ||||||||| | || ||| ||||| ||| ||| Sbjct 103851 TTGCACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTG 103910 Query 213561 CATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAG 213619 | || || ||||||| ||| || || || ||||| ||| | ||| | |||||||||||| Sbjct 103911 GAGCGAATAGTGCCCAAGTTTTGCTGATTCGACTT-GCGATTGCATGCATCCTTGTAGAG 103969 Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||||||||| | ||||| || | ||| Sbjct 103970 CATGTAGGGTGTGCCGGTTTCGATCTG 103996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529539635200