Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 158 2e-33 >seq2 Length=1145976 Score = 158 bits (174), Expect = 2e-33 Identities = 385/569 (68%), Gaps = 16/569 (3%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 |||| ||||||||||||||| || |||||||| ||||| | ||| ||| Sbjct 131739 TGGGCCATGTACAAGAAGGCTGAAGCGAGTTTTTGGACCGCTGAAGAACTGGATTTGGTG 131798 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTC-TCAAGTACGT 25598 | ||| || | | |||| | | || | |||| | || | ||| ||||| |||| Sbjct 131799 CATGACCTGAAGGACTGGGTCAAGATGACCGACAACGAAC-GCTTCTTCATCAAGCACGT 131857 Query 25599 GTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-GAGATTCA 25657 ||||| |||||||| ||| ||||| || |||||||| || || ||||| || |||| Sbjct 131858 CTTGGCGTTCTTTGCTGCCAGCGATGGGATTGTGAACGAAAACCT-TGCGATGAATTTCA 131916 Query 25658 CCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 || |||||||| || | || |||| || || ||||| |||||||| ||||| ||| Sbjct 131917 GTAGTGAAGTGCAAGTGCCTG-AGGCGCGCTGCTTTTACGGATTCCAGATCGCCATTGAA 131975 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCC 25773 || | ||||| || ||||| | |||| |||| || ||||| | |||| || Sbjct 131976 AACATTCACTCCGAAGTGTACTC---GCTTTTGATTGACACATACATCAAAGACCCGACC 132032 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| || | || | |||||||||| ||| || || | | | |||||| | Sbjct 132033 GAGAAGGACCACTTGCTACGTGCCATCGAAACCATCCCATGCGTGACCAAGAAGGCCAGT 132092 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||| |||||||| | || | | || ||| | | || || ||| | | || || Sbjct 132093 TGGGCATTGAAGTGGTGCGACTCGC-GCGCTGCTGCCTATGCTGAACGGATTTTGGCATT 132151 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGC 25951 ||| ||||| ||||| ||||| || ||||| || ||| ||||||||||| | ||| Sbjct 132152 TGCGGCTGTCGAGGGAATCTTCTTTTCGGGTTCCTTCTGCT-CCATCTTCTGGTTGAAGA 132210 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || ||| |||||| || || || || || || |||||||| | || || || Sbjct 132211 AGCGTGGGCTCATGCCTGGTCTCAGTTTCTCGAATGAACTCATCAGTCGTGATGAAGGGT 132270 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | ||| | || ||||| ||| || | ||| Sbjct 132271 TGCACTGTGACTTTGCGTGCTTGATGTAC 132299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841549043200