Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq15 134 9e-26 seq22 113 3e-19 seq78 102 5e-16 seq113 93.3 3e-13 >seq15 Length=624531 Score = 134 bits (148), Expect = 9e-26 Identities = 363/549 (66%), Gaps = 11/549 (2%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 ||||| ||| | || || || ||| || || | ||| |||||||| | || ||| Sbjct 419170 GGTATCGATCTCGGTACGACCTACTCGTGCGTCGGTGTGTGGCAAAACGACCGTGTGGAA 419111 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || || ||||| ||||||||||| | || || ||||| || || |||| || || || Sbjct 419110 ATCATCGCCAACGACCAAGGTAACCGTACGACCCCATCGTACGTCGCTTTCACCGATACC 419051 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 |||| ||| || || ||||| || || | |||| || ||| | || || | Sbjct 419050 GAACGTCTCATCGGTGATGCCGCCAAGAACCAAGTCGCCATGAATGCGCACAACACGGTC 418991 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 |||||||| || | ||||| ||||| || || ||| | | ||||| ||||||| Sbjct 418990 TTTGATGCCAAGCGTTTGATCGGTCGCAAATTCAGTGACCCAATCGTCCAGGCTGATATC 418931 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAAT---GTTGGTGGTAAACCATATAT-AGAAGCA-A 474629 || ||||| || ||||| | | | ||| | || ||| | || | || Sbjct 418930 AAGCACTGGCCATTCAAGGTCACCCCTGGCGCTGGCGACAAGCCACAAATCACGGTCACC 418871 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | |||||| || || ||| ||| |||| || || ||||| | || Sbjct 418870 TTCAAG--GGTGAAGAGAAGACGTTCCAACCAGAAGAAATCTCGTCGATGGTCCTCATCA 418813 Query 474690 AAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747 | ||||| || ||| |||| | |||| | || || | ||||||| ||||| Sbjct 418812 AGATGAAGGAAGTCGCTGAAGCT--TTCATTGGTAAGGAGGTCAAGAATGCAGTCATTAC 418755 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || || || ||||| || ||||| |||||||| || || || ||||| || ||||| Sbjct 418754 CGTCCCGGCCTATTTCAACGATTCGCAACGTCAGGCCACCAAGGATGCCGGTGCCATTGC 418695 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 ||| | || || | ||||| ||||| |||||||| || ||||| |||| || ||| | Sbjct 418694 TGGTATGAACGTGCTCCGTATCATTAACGAACCAACTGCTGCCGCTATTGCCTACGGTTT 418635 Query 474868 TGATAAGAA 474876 || ||||| Sbjct 418634 GGACAAGAA 418626 >seq22 Length=480975 Score = 113 bits (124), Expect = 3e-19 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| ||||| |||||||||||||| || |||||||| ||||| ||||| || |||||||| Sbjct 154072 ATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTT 154131 Query 480677 GTCTTGAATCTTTTGTTTGACA 480698 |||||||||||||||||||||| Sbjct 154132 GTCTTGAATCTTTTGTTTGACA 154153 Score = 113 bits (124), Expect = 3e-19 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| ||||| |||||||||||||| || |||||||| ||||| ||||| || |||||||| Sbjct 171808 ATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTT 171749 Query 480677 GTCTTGAATCTTTTGTTTGACA 480698 |||||||||||||||||||||| Sbjct 171748 GTCTTGAATCTTTTGTTTGACA 171727 Score = 96.9 bits (106), Expect = 2e-14 Identities = 115/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||||||||||||||| | ||| ||||||||||||||||| |||||||| Sbjct 154301 TCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTA 154360 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAAT--AGTATCAGTGTGTGAAGTTTCAAGGGTAA 480735 || |||||||| || || || || || ||| | || || | || | || | Sbjct 154361 TCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG--TCCAACGTGA 154418 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||| ||||| ||||| || || Sbjct 154419 TGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTG 154452 Score = 96.9 bits (106), Expect = 2e-14 Identities = 115/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||||||||||||||| | ||| ||||||||||||||||| |||||||| Sbjct 171579 TCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTA 171520 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAAT--AGTATCAGTGTGTGAAGTTTCAAGGGTAA 480735 || |||||||| || || || || || ||| | || || | || | || | Sbjct 171519 TCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG--TCCAACGTGA 171462 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||| ||||| ||||| || || Sbjct 171461 TGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTG 171428 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || || | || | ||| ||| || || ||| |||||| | ||| Sbjct 153551 CGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTA 153610 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||||| || ||||| || |||||||| |||||||||||||| |||||||| ||| Sbjct 153611 CGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCT 153670 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAG 480708 |||||||| || ||||| || || || ||||||| Sbjct 153671 TCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAG 153707 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||||||||||| ||||| | ||| ||||||||||||||||| |||||||| Sbjct 153844 ATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTT 153903 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAA 480735 ||||| || ||||| || ||| ||||||| || | | | | | | ||| |||| Sbjct 153904 ATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAA-AGTAA 153962 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || | ||||| || || || || Sbjct 153963 TCGTTTTCCCCGTCAACGTCTTCACAAAGATCTG 153996 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || || | || | ||| ||| || || ||| |||||| | ||| Sbjct 172101 CGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTA 172042 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||||| || ||||| || |||||||| |||||||||||||| |||||||| ||| Sbjct 172041 CGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCT 171982 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAG 480708 |||||||| || ||||| || || || ||||||| Sbjct 171981 TCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAG 171945 >seq78 Length=145407 Score = 102 bits (112), Expect = 5e-16 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | |||||| |||||||| || |||||||| ||||| ||||||||||||||||| Sbjct 113055 ATCTTCCAATTGCTTGCCAGCAAAGATCAGACGTTGCTGATCTGGAGGAATTCCTTCCTT 113114 Query 480677 GTCTTGAATCTTTTGTTTGAC 480697 ||| || |||||||| ||||| Sbjct 113115 GTCCTGGATCTTTTGCTTGAC 113135 >seq113 Length=36633 Score = 93.3 bits (102), Expect = 3e-13 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||||||||| ||||| |||||||| || ||||| || ||||| || |||||||||||||| Sbjct 6076 ATCTTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCCTT 6135 Query 480677 GTCTTGAATCTTTTGTTTGAC 480697 ||| ||||| || || ||||| Sbjct 6136 GTCCTGAATTTTCTGCTTGAC 6156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268167189441440