Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq17 127 1e-24 >seq17 Length=584494 Score = 127 bits (140), Expect = 1e-24 Identities = 293/432 (68%), Gaps = 12/432 (3%) Strand=Plus/Plus Query 25930 CTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTC 25989 || ||| || |||||||| |||||||| || ||||| | ||| | || | ||| Sbjct 104165 CTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACGTGCACGATGAAGTTC 104224 Query 25990 TTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAA 26049 || ||||||||||| | | ||| | ||| ||||| | || | ||||| || || || Sbjct 104225 ATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCATGCCACGGCTCCAA 104284 Query 26050 ATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTC 26109 |||||| ||||| || || | || || ||||||||||| ||||| | ||||| || Sbjct 104285 ATAGATTGCAAACGACCCCTTGCGCTTGCCACCACCTTGATCAACGTAACGAGCAGTGTC 104344 Query 26110 ATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAAT-CCGTTTGTGCTATGAATCT 26168 |||||| || |||||| || || ||| | |||| | | || ||||| | | | || | Sbjct 104345 ATTGAACACACGCAACATAGGCAC-AATACCGTTGGACGTGCCATTTGTACCACGGATGT 104403 Query 26169 TG-GATCCTGTCGATCTAATATCGTGAGCATG--AATACCGATTCCACCAGCCCATTTTG 26225 | || | |||| | ||| | || ||||| || ||||| || || ||||| || | Sbjct 104404 AGCTATTC-GTCGCGCGAATGT--TGTGCATGCTGATGCCGATACCCCCTGCCCACTTGG 104460 Query 26226 AAATAGCTGCACAAT--CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | || ||| || | ||| | || ||| |||| || | || ||| ||| ||| Sbjct 104461 AGATGCATGCGCATTGCTTGAGA--GTGTCGTAAATGCCCTCAATAGAATCGTCTTGCAT 104518 Query 26284 TCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGG 26343 | ||||| ||||| ||||| | ||| | | | ||| |||| ||||| | ||| || Sbjct 104519 GGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACAGTGTTGG 104578 Query 26344 TGTAGCATGAGT 26355 ||| || || || Sbjct 104579 TGTGGCGTGCGT 104590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039136501000