Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 >seq2 Length=1145976 Score = 143 bits (158), Expect = 3e-29 Identities = 275/400 (69%), Gaps = 8/400 (2%) Strand=Plus/Plus Query 138179 TGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTT 138238 ||| |||||||||| ||| || || ||||| ||||| || || || || ||||| ||||| Sbjct 1032631 TGCCACACCAATAGAACCCACACCCGGACCACCACCACCGTGCGGGATGCAGAAAGTCTT 1032690 Query 138239 ATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTG 138298 |||||||| | || || ||||| || ||| || || || || | ||||| || Sbjct 1032691 GTGTAAATTCAAGTGGCACACATCCGCGCCAATGTTACCAGGGTTGCACAATCCTACTTG 1032750 Query 138299 TGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACA 138358 ||||| | || ||||| || | || || || || || | | ||| | || || ||| Sbjct 1032751 GGCATTCATGTTGGCACCGTCCATGTACACTTGCCCGCCGTGGGAATGGATGAGCTCACA 1032810 Query 138359 TATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCAT-AATAC 138417 || | ||||| | |||||| |||||| |||||||| ||||||||||| || | Sbjct 1032811 CATGTCCTTGATGCCTTCTTCAAACACACCAAACGTCGATGGGTATGTAATCATAAACGC 1032870 Query 138418 A-TGAG--AGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGT 138474 | | || ||| || ||| ||| | || | || | ||| ||| | | Sbjct 1032871 ACTCAGTTCGTTGGCGTG-CTTCTTGA---CCTTTTCTTCCAAATCGACACGGTCCACAT 1032926 Query 138475 TGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAG 138534 | |||| |||||| | || || | ||||||||||| || |||||||| ||||| |||| Sbjct 1032927 TACCATTCTCATCAGATTTTACGACCACAACTTTCATGCCAGCCATGACAGCACTGGCAG 1032986 Query 138535 GATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATT 138574 | || || ||||| || || | || |||| ||| ||||| Sbjct 1032987 GGTTGGTACCATGCGCAGATACAGGGATCAAACACACATT 1033026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578996373505600