Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq17 223 4e-53 seq2 145 9e-30 >seq17 Length=584494 Score = 223 bits (246), Expect = 4e-53 Identities = 1114/1744 (64%), Gaps = 58/1744 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||| ||||||| ||||| | |||||||| ||||| || | || Sbjct 104686 CCGCAGCAAATGATCATGCGTGTCGCTGTAGGCATCCATAAAGAAGATATCAAGCTGGTG 104627 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| || || | ||||| | | |||| ||||| |||||||| || || Sbjct 104626 CTTGAGACGTATGAGTACATGTCGCTCTCGTTCTTCACGCACGCCACACCAACACTGTTT 104567 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || ||||||||| | || || |||| || ||| | | |||| | || || Sbjct 104566 AACGCAGGTACACCACGGCCACAACTGTCTTCGTGTTTCTTATTGGCCATGCAAGACGAT 104507 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || || | || || || | ||||| | | | || || ||||| |||||||| ||| Sbjct 104506 TCTATTGAGGGCATTTACGACACTCTCAAGCAATGCGCATGCATCTCCAAGTGGGCAGGG 104447 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAA 75510 ||||| || || ||| || | | | || | || | || || || || ||||| Sbjct 104446 GGTATCGGCATCAGCATGCACAACATTCGCGCGACGAATAGCTAC-ATCCGTGGTACAAA 104388 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 ||| || | |||||| | || ||| | || || || || | ||| || || || || Sbjct 104387 TGGCACGTCCAACGGTATTGTGCCTATGTTGCGTGTGTTCAATGACACTGCTCGTTACGT 104328 Query 75571 AAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGC 75627 |||||| || | ||||||||||| | || |||| ||||| || |||||||| Sbjct 104327 TGATCAAGGTGGTGGCAAGCGCAAGGGGTCGTTTGCAATCTATTTGGAGCCGTGGCATGC 104268 Query 75628 CGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA- 75686 ||| | | |||||||| || || | || || ||| | ||| ||| || | Sbjct 104267 CGACGTATTTGAGTTCCTGGATTTGAGGAAGAATCACGGTAATGAACTTCATCG-TGCAC 104209 Query 75687 GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTG 75746 | ||||| |||| || ||||||| ||||| | ||||||||||| || || | | Sbjct 104208 GTGATCTGTTTTACGCCATGTGGATCCCAGATTTGTTCATGAAGCGTGTGGAAGCCAACG 104149 Query 75747 GTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAG 75805 | | ||| ||||||||| || | | || | ||||| | |||| || | |||||| Sbjct 104148 GCGAGTGGAGTCTTTTCTGCCCTAATGAAGCGACTGGTCTGTTCGACTGCTG-GGGTGAT 104090 Query 75806 GAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCA 75865 || || || ||| | ||||| ||||| |||| |||| ||| ||| | | | Sbjct 104089 GAATTCGAGGCCTTGTACACCAAGTACGAAGCCCAGGGCTTGGCCCGCAAGACCAT-CAA 104031 Query 75866 GCCGC--CGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATA 75923 | ||| | || | ||| || ||| | | | |||| || || || ||||| || | Sbjct 104030 GGCGCAACAAT-TGTGGTTCGCCATTTTGGACGCTCAGATCGAAACCGGCACACCCTACA 103972 Query 75924 TGCTTTACAAGGATGCTTGTAA---CAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 |||| ||||||||||| || || |||| || | | ||| || ||||| || || Sbjct 103971 TGCTCTACAAGGATGCATGCAATCGCAAGTCGAATCAGCAA---AACTTGGGCACTAT-- 103917 Query 75981 AGAGCTCAA--ATCTT-TGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTG 76037 |||| | | ||| ||| || | | ||||||||| ||||| || || | Sbjct 103916 -TCGCTCCAGTAACTTGTGCTGTGAGGTCGTCGAGTACACATCCAAGGACGAAGTCGCGG 103858 Query 76038 TTTGCAATTTGGCATCAATCGCCCT-TCCAAAGTATGTCAATGAAGAGACTCGCACTTTT 76096 | ||||| ||||| || || || || |||||| | |||| || | | | ||| Sbjct 103857 TGTGCAACTTGGCGTCCATTGCACTGTCCAAA-TTTGTC------GACAATGGTGTGTTT 103805 Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156 | | | | || || | |||||||| |||||||| |||| |||||| ||| |||||| Sbjct 103804 AACTTTCAGAAGCTCTACGAAATCACGAAGATTGTGACCAGAAATCTGAACAAGGTCATT 103745 Query 76157 GACAGAAATTTTTATCC---CGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 || | || | ||||| | || | |||| |||||| | ||||| | ||| Sbjct 103744 GATATCAACTACTATCCGATCCCAGAAGCCAAGCGA---TCTAATCTACGACATCGCCCT 103688 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGAT 76273 | ||| | ||||| ||||| | || |||| |||||| | | | | | || || Sbjct 103687 GTGGGTATTGGTGTGCAAGGGTTGGCTGATGCGTTTATTCTCATGGGGTTCCCCTTCGAA 103628 Query 76274 TCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTG 76333 || |||| || |||| | || |||||||| |||| | | | || || Sbjct 103627 AGTGAGCAAGCGCGAGAATTGAACAAGCACATTTTTGAAACGCTGTACTATGGAGCCATG 103568 Query 76334 GAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCC 76393 || || | ||| | || | | | || | ||||| || | ||||| || || Sbjct 103567 GAAGCATCTATGGAACTTGCAAAGGAGTATGGCCCGTATGAAACTTACGAGGGCTCCCCT 103508 Query 76394 GCGTCCCAAGGGGTGCTT-CAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACGA 76452 | | |||||| ||| |||||||||||||||| || | |||| || | Sbjct 103507 GTG-AGCAAGGGCATCTTCCAGTTTGATATGTGGG-GTGTCACTCCAACATCTGGT--CT 103452 Query 76453 CTGGGA-TGTTCT-CAAGGAACGCATCAAG-----GAGAAGGGTCTTCGTAACAGTCTTT 76505 |||||| || || || ||| || ||||| | | ||| | || ||| || | Sbjct 103451 CTGGGATTGGGCTGCATTGAAAGC-TCAAGTCGCTAAACATGGTGTGCGCAACTCCCTGT 103393 Query 76506 TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 76565 || |||| || |||||||| || || || || || |||||||| |||||||||| | ||| Sbjct 103392 TGTTGGCGCCCATGCCAACGGCGTCGACTGCTCAGATCTTGGGCAATAATGAATCCATTG 103333 Query 76566 AACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCA 76625 | |||| ||| | ||||| ||| | | ||||| ||||| ||| || |||| Sbjct 103332 AGCCATTCACGTCCAACATGTACAACCGTCGCGTGCTCGCTGGTGAATTTACGATCGTCA 103273 Query 76626 ACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC 76685 ||||| ||||| | || || |||| | ||||| ||||| | || || | | Sbjct 103272 ACAAGTACCTCATGAAGGAGCTCATCGAACTTGGTATCTGGACACCTGAGGTGCGCAACC 103213 Query 76686 TCATGGTGAAAGCGGGTGGTTCCATTCAAAATAT---CTCAGATATCCCAGATGATATCA 76742 || || | | ||||| || | ||||| | ||| || || |||| |||| Sbjct 103212 AAATCTTGCATGACGGTGGCTCGGTGCAAAAAGTGCGCTC---GATTCCTGATGCAATCA 103156 Query 76743 AGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAG 76802 || | ||| |||||||||||||||||| || | || | || |||| || | Sbjct 103155 AGGAAAAGTACAAAACAGTGTGGGAAATCAAGCAAAAGGTCGTGTTAGATTTGGCAGCTG 103096 Query 76803 ATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGA 76862 |||||||| || ||| ||||| || |||| | ||| | || ||| Sbjct 103095 ATCGTGGTGCCTACATCTGCCAAAGCCAGTCGCTGAACGTGCACATCGCCGACCCGACGG 103036 Query 76863 TGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGT 76922 || |||| | | || ||||| | ||||||||||| | || || || ||||| |||| Sbjct 103035 TGAGCAAGTTGACATCGATGCACTTTTACGCGTGGAAGCGAGGACTTAAGACCGGCATGT 102976 Query 76923 ACTA 76926 |||| Sbjct 102975 ACTA 102972 >seq2 Length=1145976 Score = 145 bits (160), Expect = 9e-30 Identities = 551/845 (65%), Gaps = 36/845 (4%) Strand=Plus/Plus Query 64690 TATAAAAAGGCTCAAATGAGCAATTGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTT 64749 || || |||||| || ||| |||||| || |||||| | |||||| | || || Sbjct 131748 TACAAGAAGGCTGAAGCGAGTTTTTGGACCGCTGAAGAACTGGATTTGGTGCATGACCTG 131807 Query 64750 GACGACTGG---AAGACCCTGAATGAAAATGAAAAGAAATTCATAAAGTACATCCTGGCA 64806 | |||||| |||| ||| || || ||| ||||| ||| || || |||| Sbjct 131808 AAGGACTGGGTCAAGA---TGACCGACAACGAACGCTTCTTCATCAAGCACGTCTTGGCG 131864 Query 64807 TTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAATTTTGCGGATGAA 64866 |||||||||| |||||| ||||| || || | | ||||| |||| Sbjct 131865 TTCTTTGCTGCCAGCGATGGGATTGTGAACGAAAACCTTGCGATGAATTTCAGTAGTGAA 131924 Query 64867 GTGCAGATAAGCGAAGCGCGCTCATTCTACGCATATCA-AT-GCCATAATGAAATGGTTC 64924 ||||| | || ||||||| || |||| || || || ||||| ||||| ||| Sbjct 131925 GTGCAAGTGCCTGAGGCGCGCTGCTTTTACGGATTCCAGATCGCCAT--TGAAAACATTC 131982 Query 64925 ATGGCGAAACATATTCAAAATTGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGC 64984 | |||| || || |||||||||| |||||| || || | || ||| | | Sbjct 131983 ACTCCGAAGTGTACTCGCTTTTGATTGACACATACATCAAAGACCCGACCGAGAAGGACC 132042 Query 64985 AGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGA 65044 | || | |||||| |||| | ||||| | |||||||| | |||||| ||| Sbjct 132043 ACTTGCTACGTGCCATCGAAACCATCCCATGCGTGACCAAGAAGGCCAGTTGGGCATTGA 132102 Query 65045 AATGGTTTGACACAAAGTCTCGCT-CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTG 65103 | |||| ||| | || ||| ||| || || || |||| || |||||| ||| Sbjct 132103 AGTGGTGCGACTCGCGCGCT-GCTGCCTATGCTGAACGGATTTTGGCATTTGCGGCTGTC 132161 Query 65104 GAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTC 65163 ||||| |||||||| || || || |||||| | || | |||||||||||||| || ||| Sbjct 132162 GAGGGAATCTTCTTTTCGGGTTCCTTCTGCTCCATCTTCTGGTTGAAGAAGCGTGGGCTC 132221 Query 65164 ATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAG 65223 ||||| || || | ||||| |||||||| || || ||||| || | ||| || Sbjct 132222 ATGCCTGGTCTCAGTTTCTCGAATGAACTCATCAGTCGTGATGAAGGGTTGCACTGTGAC 132281 Query 65224 TTTGC---CGTGGAGCTCTTCAAGACTTTGCGTAATAGACCCACTACCGAA---AC-TAT 65276 ||||| | || | || |||| || ||| | || || ||| | || | Sbjct 132282 TTTGCGTGCTTGATGTACTCCAAG-CT---CGTCA---ACAAGCTTCCGGAGTCACGCGT 132334 Query 65277 CCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCC 65336 |||| ||| | || || || ||||||||| | ||| || ||| | ||||| Sbjct 132335 GCACGAAATCATTGGTGACGCCGTCACGATTGAGAAGGAATTCGTCAAGGATTCGCTCCC 132394 Query 65337 -ATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTG-AGTATGTGTCG 65394 || ||| | || || |||||||| | ||||| ||||||||| | | |||| | Sbjct 132395 TGTGGAAT-TGATTGGCATGAACTCGACGCTGATGTGTCAGTACATTGAATTCTGTG-CT 132452 Query 65395 GATCGTCTCCTCAAACAAG---TTGGGGTGCCACCCATTTGGAACGCGAAGAATCCATTT 65451 |||||| | || ||| | |||| || | || | ||||| ||||| || ||| Sbjct 132453 GATCGTTTGCT---ACATGCGCTTGGTGTATCCAAGATCTACAACGCCAAGAACCCTTTT 132509 Query 65452 GACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGG 65511 |||| ||||| | || || | || |||||||| |||||||||||||| || || Sbjct 132510 GACTGGATGGACATGATCTCACTGCAGGGCAAGACCAATTTCTTTGAGAAGCGTGTGGGT 132569 Query 65512 GACTA 65516 || || Sbjct 132570 GAATA 132574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567512006400