Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq17 149 2e-30 seq3 131 5e-25 seq11 84.2 6e-11 >seq17 Length=584494 Score = 149 bits (164), Expect = 2e-30 Identities = 257/368 (70%), Gaps = 9/368 (2%) Strand=Plus/Plus Query 155973 TCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATA--TCAGGATGGTGTGGCT 156030 |||| ||||||||||||| | || | ||| || |||| || | ||| |||| Sbjct 104223 TCATTACCGTGATTCTTCCTCAAATCCAGGAACTCA--AATACGTCGGCATGCCACGGCT 104280 Query 156031 CCAGATACATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAG 156087 ||| ||| || ||||| || || | ||||||||| ||||| || || ||||||| Sbjct 104281 CCAAATAGATTGCAAACGACCCCTTGCGCTTGCCACCACCTTGATCAACGTAACGAGCAG 104340 Query 156088 TCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAA 156147 | | |||||| |||| | |||||| | |||||| ||||| |||||||| || || || | Sbjct 104341 TGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACGTGCCATTTGTACCACGGA 104400 Query 156148 TAT-GCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTA 156206 | | || | | | | ||||| || || || | || ||||| |||| ||| || Sbjct 104401 TGTAGCTATTC-GTCGCGCGAATGTTGTGCATGCTGATGCCGATACCCCCTGCCCACTTG 104459 Query 156207 GAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATT 156266 || || ||||||| ||| | ||| | | |||| || ||||||||||| |||| ||| Sbjct 104460 GAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATCGTCTTGCATG 104519 Query 156267 GATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGT 156326 | | || | |||||| | ||| || |||||||| || ||||| || ||||| ||| Sbjct 104520 GCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACAGTGTTGGT 104579 Query 156327 GTTGCATG 156334 || || || Sbjct 104580 GTGGCGTG 104587 >seq3 Length=1043435 Score = 131 bits (144), Expect = 5e-25 Identities = 260/380 (68%), Gaps = 10/380 (3%) Strand=Plus/Plus Query 302490 GTCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGT 302549 ||| || || || || ||||| || |||| ||||||| || ||||| || || Sbjct 288792 GTCCATACCATCTTCACCGTACAAAAACTGGATGATTTCACCCTGAGCATTTCGAACAGT 288851 Query 302550 CATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACC 302609 |||||| | ||||| |||||| || | || ||||||||||| ||||| Sbjct 288852 TCCATCATATCGCGCCATAACCGATTCCATGGCTTTCACCAAGCGACGCTGAATGTAACC 288911 Query 302610 AGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAA 302669 ||| || ||||| ||||| |||||||| | ||| |||||||||||||||| || || Sbjct 288912 CGTTTCAGCAGTTTTCACAGCAGTATCAATCAAACCTTCACGACCACCCATAGCGTGAAA 288971 Query 302670 GAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC 302729 ||| | |||| || || ||| | | | || |||| || || || || ||| Sbjct 288972 GAAGAATTCTTGAGGAGTTAAACCCTTCAAATATGAATTCTCGACAAACCCTCGACTCTC 289031 Query 302730 GGG--CGA-ATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| ||| || |||| | | || || || || | | | | ||||||| || Sbjct 289032 GGGACCGAGATCATC---CTTGCCATAATGCGGGAGCGTGCGATGGTTAAAGCCGTACGG 289088 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT--T 302844 || || ||||| |||||||| ||||| |||| || | ||| |||||||| ||||| | Sbjct 289089 AATTCGTTTTCCTTCAACGTTTTGCTGCCCCACACAAGCAATAATCTGCGAGATATTGAT 289148 Query 302845 AAATCACTGCCCTTGGAGCC 302864 ||| || |||||||| || Sbjct 289149 AAAAGAC--CCCTTGGAACC 289166 >seq11 Length=740280 Score = 84.2 bits (92), Expect = 6e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 60163 TGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATT 60222 ||| ||||| || |||||||| | | ||| || ||||| |||||||| || |||| Sbjct 453111 TGCAGCGTCTTTTCCACCCATCAATCTGGTACCGAATTGGCCGTTTGGAGAGAGAAGATG 453170 Query 60223 AATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGC 60282 ||| ||||| ||| || |||| ||| || | | ||| | || || || || Sbjct 453171 AATATTGTTGCTGCCGACAAAATCTTGCGCCATGTTGATAATTGTCCCGTTCAAGCTTTG 453230 Query 60283 TTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAAT 60342 |||||||||||||| |||| ||||| || || || ||| ||||| || || || || Sbjct 453231 CTCACCGTGATGATAAGCAGAGTGTTCCGACACGTAGCCAGCCAATTGAGCTACCTTGAT 453290 Query 60343 TTCGGA 60348 ||| || Sbjct 453291 TTCAGA 453296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471812319854360