Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 131 2e-24 seq17 105 8e-17 seq63 96.9 4e-14 seq12 91.5 2e-12 >seq2 Length=1145976 Score = 131 bits (144), Expect = 2e-24 Identities = 229/325 (70%), Gaps = 14/325 (4%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||||| ||| || ||||| ||| ||| || || ||||||||||||| || |||||| Sbjct 132583 GCCTTGGAGTATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATC 132524 Query 868751 AACTCCATCCACGGGAACGGGT--TGGGCGTCTTGTAGTGCTTTTCGCAT---CCGAGCG 868805 | |||||||| || |||| | |||| |||||| ||| | || || |||| Sbjct 132523 ATGTCCATCCAGTCAAAAGGGTTCTTGGCG--TTGTAGATCTT---GGATACACCAAGCG 132469 Query 868806 ACGCGAGCAGGCGGTCGGCGACA-AACTCGATGTACTGGCACATGAGGCCGGCGTTCATG 868864 |||| || || || ||| || || |||||||| ||||| || | ||||||| Sbjct 132468 CATGTAGCAAACGATCAGC-ACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATG 132410 Query 868865 CCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG 868924 || || | |||| || ||||| || | || || || ||||| ||| |||||| || Sbjct 132409 CCAATCAATTCCACAGGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCA 132350 Query 868925 ACGATGATCTGCCTGGGCACGT-CGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAG 868983 | ||||| | | || | ||| ||| |||||||||||||| | | ||| | || Sbjct 132349 CCAATGAT-TTCGTGCACGCGTGACTCCGGAAGCTTGTTGACGAGCTTGGAGTACATCAA 132291 Query 868984 GCAGGCAAAGTCGCAGTGCAACCCT 869008 ||| |||||||| |||||||||||| Sbjct 132290 GCACGCAAAGTCACAGTGCAACCCT 132266 Score = 120 bits (132), Expect = 4e-21 Identities = 207/298 (69%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||| || |||||||||||||| ||||||||| | | |||| | |||||| Sbjct 131986 GAGTGAATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGCGCCTCAGGCACTTGC 131927 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || | |||| || ||||| ||| ||| || || |||||||| || || Sbjct 131926 ACTTCACTACTGAAATTCATCGCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGCAAAG 131867 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || |||| |||||||||||| ||| ||| |||| |||| | | | ||||||| Sbjct 131866 AACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCATCTTGACCCAGTCCTTC 131807 Query 869813 GTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||| || | | |||| || || |||||||| | || || ||||| ||||| Sbjct 131806 AGGTCATGCAC-CAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCAGCCTTCTTGTA 131748 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCG 869929 ||| |||| |||| | | | |||| ||||| | ||||| || || ||||| ||| Sbjct 131747 CATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCGATTTGGGTTCTCG 131690 >seq17 Length=584494 Score = 105 bits (116), Expect = 8e-17 Identities = 196/288 (68%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || || ||||| || || ||||| || || || || | ||| ||||| | ||||||||| Sbjct 104322 TGATCAACGTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGAC 104381 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||| || || || | |||| | ||||| | |||||| | | |||| Sbjct 104382 GTGCCATTTGTACCACGGATGTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATGCCG 104441 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || ||| ||||||||||| ||||| || ||||| |||||||| |||||||| Sbjct 104442 ATACCCCCTGCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCA 104501 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || || ||| | | |||| ||| | || ||||| || ||| || | | || || Sbjct 104502 ATAGAATCGTCTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCT 104561 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATG 1630353 ||||| || || || || || || ||||| ||| |||||||| Sbjct 104562 GCGTTAAACAGTGTTGGTGTGGCGTGCGTGAAGAACGAGAGCGACATG 104609 Score = 96.9 bits (106), Expect = 4e-14 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCC 1627040 || |||||| |||||||| ||||| ||||| || | |||| ||||||||||| Sbjct 102923 CTTGTCGACCGTAAACTGAATGGCATCGGCCTTCGGTCGCCCACGCATGTAGTACATGCC 102982 Query 1627041 GGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGA---TGCGCTCGGGCGT 1627097 |||||| || || || ||||||||| ||||||||| || | ||| | | ||| Sbjct 102983 GGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTTGCTCAC---CGT 103039 Query 1627098 CGCGTCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGC 1627157 || ||||||| || || ||| ||||||||||| ||| || |||| | ||||| || Sbjct 103040 CGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGGCAGATGTAGGCACCACGATCAGC 103099 Query 1627158 CGCCA 1627162 |||| Sbjct 103100 TGCCA 103104 >seq63 Length=227164 Score = 96.9 bits (106), Expect = 4e-14 Identities = 165/232 (71%), Gaps = 13/232 (6%) Strand=Plus/Minus Query 1178261 CCGATCGTGCACCGCGACCTCAAGTCGTCCAACCTGCTCGTCG--ACGACAACTTCACAA 1178318 |||||| | || |||||||||||| |||| |||||||||| ||| || || | | Sbjct 43029 CCGATCCTACATCGCGACCTCAAGAGCCCCAATCTGCTCGTCGATACGTCA--TTTGCGA 42972 Query 1178319 TCAAGGTGGCCGACTTTGGCTTTGCCCGCATCCGCGAGGACAATGC--GACGATGACGCG 1178376 |||| | | || || || || || || | ||| | || | | |||||||||| | Sbjct 42971 TCAAAATTTCTGATTTCGGATTGGCTCG--TGTGCGTGCGCATTTCCAGACGATGACGGG 42914 Query 1178377 ---GTGCGGCACGCCGGCGTGGACGGCGCCCGAGGTCCTGCGCGGC-GAGCGCTACTCGG 1178432 |||||||| || ||||| |||||| ||||| || ||| || ||| ||| | | Sbjct 42913 TAACTGCGGCACAACGCAGTGGATGGCGCCAGAGGTGCT-CGCTGCTGAGAAATACACTG 42855 Query 1178433 AAAAGGCCGACGTCTACTCGTTTGGCGTCGTCATGTGGGAGATCATCACGCG 1178484 | || ||||| || | ||||||||| ||||| ||||||||| |||||||| Sbjct 42854 AGAAAGCCGATGTATTCTCGTTTGGTGTCGTGGTGTGGGAGACGATCACGCG 42803 >seq12 Length=715444 Score = 91.5 bits (100), Expect = 2e-12 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 19065 GTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTTGACAAGATC 19124 |||||||| ||| ||||| ||||| | || | || ||||||||||||||||| | Sbjct 224016 GTGACGTGTGTGATCCGCAATGTGCCTGTTGGTTTGGGTGAGCCGTGCTTTGACAAACTG 223957 Query 19125 GAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 |||||| | | || |||||||| || ||||| || ||||| ||||| || || |||||| Sbjct 223956 CAGGCCGTGTTGGCGCACGCCATTCTCTCGATTCCTGCCACGAAGGGCTTTGAAATTGGC 223897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107116221888760