Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq17 154 1e-32 seq22 141 8e-29 seq78 123 2e-23 >seq17 Length=584494 Score = 154 bits (170), Expect = 1e-32 Identities = 891/1408 (63%), Gaps = 79/1408 (6%) Strand=Plus/Plus Query 138461 TGTACAGATTC-AACTT-GATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTC 138518 ||| ||||| | || || ||| | || || || || || |||| | || | |||||| Sbjct 103229 TGTCCAGATACCAAGTTCGATGAGCTCCTTCATGAGGTACTTGTTGACGATCGTAAATTC 103288 Query 138519 ACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTT 138578 ||| || | || ||||| ||| |||||| ||||| ||||||| ||||| || || Sbjct 103289 ACCAGCGAGCACGCGACGGTTGTACATGTTGGACGTGAATGGCTCAATGGATTCATTATT 103348 Query 138579 TCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAA 138638 |||| |||||||| || | ||| || |||||| ||||| ||| || || || || | Sbjct 103349 GCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAACAACAGGGAGTTGCGCAC 103408 Query 138639 ACCGTGA--AGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTT 138696 ||| || ||| || | | | || | | | ||| ||||| | | | || | || Sbjct 103409 ACCATGTTTAGC--GACTTGAGCTTTCAATGCAGCCCAATCCCAGAGACC---AGATGTT 103463 Query 138697 TTGTT------CCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTAC 138750 | ||||||||| |||| || || ||| || | || ||| ||||| Sbjct 103464 GGAGTGACACCCCACATATCAAACTGGAAGATGCCCTTGCTCACAGGGGAGCCCTCGTAA 103523 Query 138751 GAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAA 138810 | || || ||| |||| | || | || | || || | || |||||||| Sbjct 103524 GTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGATGCTTCCATGGCTCCATAGTAC 103583 Query 138811 ATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGG 138870 | ||||| ||| |||| || | ||| || | | || ||| | || | | Sbjct 103584 AGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCACTTTCGAAGGGGAACCCC 103643 Query 138871 AGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGA 138930 | | | ||||| || |||| ||||||||| || | || ||||||||||| || ||| Sbjct 103644 ATGAGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCGTAGA 103703 Query 138931 TTTGA-CGCTTTTGCGGCTTC---GATAGGATAATAGTTTACATCGATGATTTTGTTTAA 138986 || || ||||| |||||| ||| ||||| ||||| | ||| |||| ||||| | Sbjct 103704 TTAGATCGCTT----GGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTTCAG 103759 Query 138987 ATTTCGCACGACCACCTTAGT-----CGTAT-GCTT-TAATCGTTCAAAATCGTATGTGC 139039 ||||| || | ||| || |||| |||| | | ||| || | Sbjct 103760 ATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTTCTGAAAGTTAAACA---------- 103809 Query 139040 CCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACA--AATCGAGGCTATGTTGCA 139097 | || |||||| ||||||||| |||| ||| || || | |||||| Sbjct 103810 CACCATTGTCG------------ACAAATTTG--GACAGTGCAATGGACGCCAAGTTGCA 103855 Query 139098 CACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTT 139157 |||||| |||||||| | |||| ||||| | || ||||| ||||| | Sbjct 103856 CACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTGGAGCG 103915 Query 139158 GATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATA 139217 || || || || ||||| ||||| || || || || ||||| ||||| ||||| || Sbjct 103916 AATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCCTTGTAGAGCATGTA 103975 Query 139218 CGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTC-----CCTAGCT 139272 |||||||| ||||| | || | || | |||| |||| | ||| | | Sbjct 103976 GGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACCACAATTGTTGCGCCTTGAT 104035 Query 139273 TGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGT 139332 || || || | ||| | || |||||||| ||| | | |||||| Sbjct 104036 GGTCTT----GCGGGCCAAGCCCTGGGCT-TCGTACTTGGTGTACAAGGCCTCGAATTCA 104090 Query 139333 TCACCGTAGGCGTCAGAAAGATCGCGACACTTG-TCAGGACACATGAGCGACCATACGCC 139391 ||||| || ||| | ||| | | | ||| | ||| || | || ||| |||| Sbjct 104091 TCACCCCAGCAGTCGAACAGACCA-GTCGCTTCATTAGGGCAGAAAAGACTCCACTCGCC 104149 Query 139392 GTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCG 139451 ||| || | || ||| ||||||||| ||| || ||||||| ||| | | || ||| || Sbjct 104150 GTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACG 104209 Query 139452 CGCCTTCTTATCTTCCGAACCCATGTTACGTT-TCATGTTAAGGAAATCAAAAACGTCAG 139510 || | | ||| ||| || | | | ||| | ||||| ||||| ||||| | Sbjct 104210 TGCACGATGAAGTTCATTACCG-TGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGG 104268 Query 139511 CGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCAC---CTTGATCGA 139567 | ||||| || |||| |||||| || | | || || || ||||||| ||||||| | Sbjct 104269 CATGCCACGGCTCCAAATAGATTGCAAACGACCCCTTGCGCTTGCCACCACCTTGATCAA 104328 Query 139568 CGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGT 139627 ||| || ||| | |||||| || |||||||| ||| | | |||| | | || || | Sbjct 104329 CGTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACGTGCCAT 104388 Query 139628 TGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACAT--TGATGCCGATTCC 139685 | || | ||||||| || || || || | || ||| ||| |||||||||| || Sbjct 104389 TTGTACCACGGATGTAGCTATTCGTCGCGCGAATGT--TGTGCATGCTGATGCCGATACC 104446 Query 139686 GCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTTATGC 139744 || | | ||||| || | ||| || || | | || ||||| || || || Sbjct 104447 CCCTGCCCACTTGGAGATGCATGCGC-ATTGCTTGAGAGTGTCGTAAATGCCCTCAATAG 104505 Query 139745 TGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTG 139804 ||||| ||||| | | | || || || || ||||| || || || || || Sbjct 104506 AATCGTCTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGT 104565 Query 139805 CAAACAGAGTAGGACTCGCGTGCGTGAA 139832 |||||| || || | ||||||||||| Sbjct 104566 TAAACAGTGTTGGTGTGGCGTGCGTGAA 104593 >seq22 Length=480975 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || |||| || || || || || | || || ||| | || Sbjct 154227 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCC 154168 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || ||||||||||| |||||||| ||||| || ||||| ||||| Sbjct 154167 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 154108 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | |||||||| || || ||||| |||||| | | || || || ||| Sbjct 154107 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAAC 154048 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| |||||| | |||||||| ||||| |||| || ||| Sbjct 154047 ATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGGC 154000 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || |||| || || || || || | || || ||| | || Sbjct 171653 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCC 171712 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || ||||||||||| |||||||| ||||| || ||||| ||||| Sbjct 171713 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 171772 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | |||||||| || || ||||| |||||| | | || || || ||| Sbjct 171773 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAAC 171832 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| |||||| | |||||||| ||||| |||| || || Sbjct 171833 ATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGG 171879 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||| | || || ||||| ||||| | || || || || | Sbjct 153999 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCG 153940 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||| |||||||| || ||||| || ||||| |||||| Sbjct 153939 GACTCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCTGATCAA 153880 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||| || || || || ||| |||| ||| | | || || |||||| Sbjct 153879 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATAAC 153820 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| ||||| || ||||||||| | || |||| || || Sbjct 153819 ATCCAAAAGGAGTCGACGCTCCACTTGGTGCTTCGTCTGCGTGGTGG 153773 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || ||||| || || || ||| | || || ||| | Sbjct 154458 ACAATGCAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCG 154399 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||| | | || | || || || ||||| || || || ||||| || ||||| ||| Sbjct 154398 TCCGACTCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGAT 154339 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||| |||||||| ||||| || || |||||||| || | | || || ||| Sbjct 154338 CAACAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTAT 154279 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| |||||||||||| | ||||||||| | || |||| || || Sbjct 154278 AATATTCAGAAGGAATCGACATTGCACTTGGTGCTTCGTCTGCGAGGTGG 154229 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || ||||| || || || ||| | || || ||| | Sbjct 171422 ACAATGCAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCG 171481 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||| | | || | || || || ||||| || || || ||||| || ||||| ||| Sbjct 171482 TCCGACTCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGAT 171541 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||| |||||||| ||||| || || |||||||| || | | || || ||| Sbjct 171542 CAACAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTAT 171601 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| |||||||||||| | ||||||||| | || |||| || || Sbjct 171602 AATATTCAGAAGGAATCGACATTGCACTTGGTGCTTCGTCTGCGAGGTGG 171651 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || || | || || ||| | | Sbjct 153771 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 153712 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || |||||||| ||||| ||||| || ||||| |||||| Sbjct 153711 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 153652 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || ||||| || || |||||||| || | | || ||||| || Sbjct 153651 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 153592 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||||||||||||| | ||||||||| | || | ||||| ||| Sbjct 153591 ATTCAAAAGGAATCGACATTGCACTTGGTGCTTCGTCTTCGCGGTGGC 153544 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || || | || || ||| | | Sbjct 171881 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 171940 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || |||||||| ||||| ||||| || ||||| |||||| Sbjct 171941 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 172000 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || ||||| || || |||||||| || | | || ||||| || Sbjct 172001 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 172060 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||||||||||||| | ||||||||| | || | ||||| ||| Sbjct 172061 ATTCAAAAGGAATCGACATTGCACTTGGTGCTTCGTCTTCGCGGTGGC 172108 >seq78 Length=145407 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 24696 TTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAG 24755 |||||| |||||||||||| | ||||| || || || || || || ||||| || || | Sbjct 113218 TTGATAAGATGCAGATCTTCGTCAAAACTCTTACGGGCAAGACCATCACGCTGGACGTGG 113159 Query 24756 AAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTC 24815 || | | |||| | || | || || ||||||||||| ||||| |||||||| |||| Sbjct 113158 AACCTTCGGACAGCATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTC 113099 Query 24816 CCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAG 24875 | ||||| |||||| |||||||||| || || || |||| ||| | | | || | Sbjct 113098 CAGATCAGCAACGTCTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACGCTTTCGG 113039 Query 24876 ATTATAACATTCAAAAGG 24893 | || ||||| ||||||| Sbjct 113038 ACTACAACATCCAAAAGG 113021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896025358400