Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 172 9e-37 seq47 104 4e-16 >seq2 Length=1145976 Score = 172 bits (190), Expect = 9e-37 Identities = 237/329 (72%), Gaps = 7/329 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||| || |||||||| | ||| || || | ||| || |||||||| || |||||| Sbjct 132268 CCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCAGGCATGAGCCCACGCTTC 132209 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| ||||||| ||||| ||||| || ||||| |||||||| || ||||| Sbjct 132208 TTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATTCCCTCGACAGCCGCAAAT 132149 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAG--GCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | | | ||| || ||| | | ||| || | | || | |||||||| |||| Sbjct 132148 GCCAAAATCCGTTCAGCATAGG----CAGCAGCGCGCGA-GTCGCACCACTTCAATGCCC 132094 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | ||||| || |||| | || | || |||||||| || | | ||||||||||| Sbjct 132093 AACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGATGGCACGTAGCAAGTGGTCCTTCT 132034 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 || |||||| |||| ||| ||||| || | |||||||| || ||||| ||||||| Sbjct 132033 CGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGCGAGTACACTTCGGAGTGAATGTTTT 131974 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | |||||||||||||| || ||||||||| Sbjct 131973 CAATGGCGATCTGGAATCCGTAAAAGCAG 131945 Score = 120 bits (132), Expect = 5e-21 Identities = 223/324 (69%), Gaps = 10/324 (3%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||||| || || ||||| ||| ||| || || ||||||||||||| || Sbjct 132589 ACGCCAGCCTTGGAGTATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGT 132530 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTG--GCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||||| || ||||| | ||| |||| ||| || | Sbjct 132529 GAGATCATGTCCATCCAGTCAAAAGGGTTCTTGGCGTT--GTAGATCTTGGATACACCAA 132472 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 ||| |||| || || || ||||||||||||||| ||||| || | | ||||| Sbjct 132471 GCGCATGTAGCAAACGATCAGCACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCA 132412 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| || | |||| || ||||| || |||| || || ||||| ||| |||||| | Sbjct 132411 TGCCAATCAATTCCACAGGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGT 132352 Query 794131 CGATGATGATCTGCCTGGGCACGTCGGACGACG---GCTTGTCGACGAGCATCGTGTAGA 794187 | ||||| | | ||||| ||| || |||||| ||||||| | | ||| | Sbjct 132351 CACCAATGATTT---CGTGCACGCGTGACTCCGGAAGCTTGTTGACGAGCTTGGAGTACA 132295 Query 794188 GCAGGCAGGCAAAGTCGCAATGCA 794211 || ||| |||||||| || |||| Sbjct 132294 TCAAGCACGCAAAGTCACAGTGCA 132271 Score = 89.7 bits (98), Expect = 8e-12 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 796186 GCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATA 796245 || ||||| || ||| || || |||||||| || || || || | |||||||||||| Sbjct 131905 GCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATG 131846 Query 796246 AAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGTGTC-GGCGCCGAGGTCGAC 796304 ||| || |||| |||| | | | |||||||| | ||| || || | || | Sbjct 131845 AAGAAGCGTTCGTTGTCGGTCATCTTGACCCAGTCCTTCAGGTCATGCACC-AAATCCAG 131787 Query 796305 CTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATA--TCCGTTGG 796362 || || ||||||||||| || || ||||| |||||||| |||| | |||| | Sbjct 131786 TTCTTCAGCGGTCCAAAAACTCGCTTCAGCCTTCTTGTACATGGCCCACACTTCCG--GC 131729 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCG 796401 | |||| ||||||| ||||| ||||| ||||||||| Sbjct 131728 TCTTGGATTGGGAACAACACAAATCGATTTGGGTTCTCG 131690 >seq47 Length=302490 Score = 104 bits (114), Expect = 4e-16 Identities = 171/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || || || || ||||||||| | |||| ||| || ||| Sbjct 119099 TGTACTTCGTCACAGCCTTCGTGCCTTCCGACACGGCGTGCTTCGCCAATTCACCAGGCA 119158 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGT-GCCGA--TCGTGTTGCGCTTGTTAG 1485586 |||| ||||| || |||||||| |||||| | | | | ||| || |||||| Sbjct 119159 GCATCAAACGCACAGCCGTCTGGATTTCGCGGCTCGACAAAGTCGACTT---CTTGTTGT 119215 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 ||| | || |||||| || | | || || |||| || ||||||| ||||||| Sbjct 119216 AGCGAGACAACTTGCCGGCTTCCGAAGCAATACGCTCGAAAATATCGTTGATGAACGAGT 119275 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||||||||| ||| ||| || || ||||||||||| ||||||| Sbjct 119276 TCATGATCGACATGCCACGCTTGCTGATACCGGTTTCAGGGTGCACCTGACGAAGCACCT 119335 Query 1485707 TGTA 1485710 |||| Sbjct 119336 TGTA 119339 Score = 95.1 bits (104), Expect = 2e-13 Identities = 169/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || || || || || |||||| | |||| ||| || | | Sbjct 199409 TGTACTTCGTCACAGCCTTCGTGCCTTCCGACACAGCGTGCTTCGCCAATTCACCAGGAA 199350 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGT-GCCGA--TCGTGTTGCGCTTGTTAG 1485586 |||| ||||| || |||||||| |||||| | | | | ||| || |||||| Sbjct 199349 GCATCAAACGCACAGCCGTCTGGATTTCGCGGCTCGACAAAGTCGACTT---CTTGTTGT 199293 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 ||| | || |||||| || | | || || |||| || ||||||| ||||||| Sbjct 199292 AGCGAGACAACTTGCCGGCTTCCGAAGCAATACGCTCGAAAATATCGTTGATGAACGAGT 199233 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||||||||| ||| ||| || || ||||||||||| ||||||| Sbjct 199232 TCATGATCGACATGCCACGCTTGCTGATACCGGTTTCAGGGTGCACCTGACGAAGCACCT 199173 Query 1485707 TGTA 1485710 |||| Sbjct 199172 TGTA 199169 Score = 95.1 bits (104), Expect = 2e-13 Identities = 169/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || || || || || |||||| | |||| ||| || | | Sbjct 203401 TGTACTTCGTCACAGCCTTCGTGCCTTCCGACACAGCGTGCTTCGCCAATTCACCAGGAA 203460 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGT-GCCGA--TCGTGTTGCGCTTGTTAG 1485586 |||| ||||| || |||||||| |||||| | | | | ||| || |||||| Sbjct 203461 GCATCAAACGCACAGCCGTCTGGATTTCGCGGCTCGACAAAGTCGACTT---CTTGTTGT 203517 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 ||| | || |||||| || | | || || |||| || ||||||| ||||||| Sbjct 203518 AGCGAGACAACTTGCCGGCTTCCGAAGCAATACGCTCGAAAATATCGTTGATGAACGAGT 203577 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||||||||| ||| ||| || || ||||||||||| ||||||| Sbjct 203578 TCATGATCGACATGCCACGCTTGCTGATACCGGTTTCAGGGTGCACCTGACGAAGCACCT 203637 Query 1485707 TGTA 1485710 |||| Sbjct 203638 TGTA 203641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916216615122920