Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq22 118 7e-22 seq78 104 2e-17 seq27 82.4 5e-11 >seq22 Length=480975 Score = 118 bits (130), Expect = 7e-22 Identities = 146/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| | |||| |||| || || |||||||| || || Sbjct 154036 CTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAA 154095 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||| ||| | || | || |||||||| | || ||||||||||| | Sbjct 154096 GATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTGAC--A 154153 Query 34906 TGCTATCGATTCA-TTGGCC---TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | ||||||| | | || | ||||| || | || |||||||| ||||| | |||| Sbjct 154154 T--TATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGTCTTCCCCGTTAATGTCT 154211 Query 34962 TTACAAAGATCTGCAT 34977 | |||||||||||||| Sbjct 154212 TCACAAAGATCTGCAT 154227 Score = 118 bits (130), Expect = 7e-22 Identities = 146/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| | |||| |||| || || |||||||| || || Sbjct 171844 CTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAA 171785 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||| ||| | || | || |||||||| | || ||||||||||| | Sbjct 171784 GATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTGAC--A 171727 Query 34906 TGCTATCGATTCATT-GGCC---TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | ||||||| | | || | ||||| || | || |||||||| ||||| | |||| Sbjct 171726 T--TATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGTCTTCCCCGTTAATGTCT 171669 Query 34962 TTACAAAGATCTGCAT 34977 | |||||||||||||| Sbjct 171668 TCACAAAGATCTGCAT 171653 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||||||||| | |||| |||| |||| |||||||| ||||| Sbjct 153808 CTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTCCAACTGCTTTCCAGCGAA 153867 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || || || || | || | || ||||| || | |||||||| || || Sbjct 153868 AATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCTTGGATTTTTTGCTTCACATT 153927 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || || || || ||| ||||| | || || || || ||||| | ||||| || Sbjct 153928 GTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCAC 153987 Query 34966 AAAGATCTGCATG 34978 ||||||||||||| Sbjct 153988 AAAGATCTGCATG 154000 >seq78 Length=145407 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || ||||| |||||||| || |||| |||| |||| |||||| || || |||| Sbjct 113021 CCTTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGA 113080 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| |||||||| ||| | || | || |||||||| | || ||||| |||||| Sbjct 113081 TCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGT 113140 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | || || | || || || | || |||||||| ||||| || || || || | Sbjct 113141 CAATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGA 113200 Query 34968 AGATCTGCAT 34977 |||||||||| Sbjct 113201 AGATCTGCAT 113210 >seq27 Length=441917 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | |||||||||||||| ||||| |||||||| || |||| | || ||| Sbjct 63557 ACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCTTCC 63616 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 | |||||| || || |||||||| || ||||| || Sbjct 63617 AATTGCTTGCCAGCAAAGATCAGACGCTGCTGATC 63651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691688573320