Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq22 86.0 5e-12 >seq22 Length=480975 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/236 (68%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTAC------CGTCGAAACGGAG 107609 ||||| || ||||| || || ||||| || || ||||| || ||||||| || Sbjct 154227 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCC 154168 Query 107610 G-CTGG--CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCC 107666 | || | ||||| |||| |||||||||||| || || |||||| | || Sbjct 154167 GACTCGATCGATAATGTC---------AAACAAAAGATTCAAGACAAGGAAGGCATCCCT 154117 Query 107667 GTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCG 107726 |||||||| | || || | ||| || || ||||| ||||| | || || Sbjct 154116 CCAGATCAGCAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGC 154057 Query 107727 GACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||||| |||||||| || |||||| |||| ||| | |||| || || Sbjct 154056 GACTACAACATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGG 154001 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/236 (68%), Gaps = 18/236 (8%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTAC------CGTCGAAACGGAG 107609 ||||| || ||||| || || ||||| || || ||||| || ||||||| || Sbjct 171653 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCC 171712 Query 107610 G-CTGG--CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCC 107666 | || | ||||| |||| |||||||||||| || || |||||| | || Sbjct 171713 GACTCGATCGATAATGTC---------AAACAAAAGATTCAAGACAAGGAAGGCATCCCT 171763 Query 107667 GTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCG 107726 |||||||| | || || | ||| || || ||||| ||||| | || || Sbjct 171764 CCAGATCAGCAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGC 171823 Query 107727 GACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||||| |||||||| || |||||| |||| ||| | |||| || || Sbjct 171824 GACTACAACATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGG 171879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398875438832920