Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq15 224 7e-53 seq4 95.1 9e-14 seq3 89.7 4e-12 >seq15 Length=624531 Score = 224 bits (248), Expect = 7e-53 Identities = 942/1462 (64%), Gaps = 49/1462 (3%) Strand=Plus/Plus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 || || || ||| | |||| ||| || | ||||| |||||||| | ||||| ||||| Sbjct 417705 GTCGACTTTTCAACCGCAGACACGTTCAAGATACCGTTGGCATCAATGTCAAAGGTGACA 417764 Query 281471 TCAATTTGAGGGACCCCTCTCTGAG-CA--GGTGGGATCCCTTCCAAATTAAATGTTCCC 281527 || || || || || || | ||| || |||||||| || ||||| || || | ||| Sbjct 417765 TCGATCTGTGGCACACCAC---GAGGCATCGGTGGGATGCCATCCAAGTTGAACTTGCCC 417821 Query 281528 AGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACA 281587 | || || || || | |||||||| || || | || || || || Sbjct 417822 AACAAGTTGTTGTCGCGGGTCATCGAACGTTCACCTTCAAAGACCTGAATCAACACACCA 417881 Query 281588 GTTTGATTATCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTT 281646 | || || || | || || | || | |||| || || || ||| | || ||||| Sbjct 417882 GGCTGGTTGTCGGCGTAGGTCGAGAA-AGTCTGCGACTTCTTGGTAGGCACAGTCGTGTT 417940 Query 281647 TCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGT 281706 | | || | | ||||||||| |||||| || ||||| |||||||| || | || || Sbjct 417941 ACGGGCGATCAAAGTGGTCATAACACCACCGGCGGTTTCCAAACCAAGCGACAATGGGGT 418000 Query 281707 GACATCAACTAGGACAATATTTTGAAGTTTTTCA--TCAGTT-TGACCAACAAGAATAGC 281763 ||||||| | | | || ||||| |||||| | || | ||| | ||| || Sbjct 418001 CACATCAAGCAACAACAGATCCTGAAGCTTTTCAGATTGGTCGTTACCGCTCAAAATGGC 418060 Query 281764 TGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAG--TTTCATTTAGT 281821 || || | || |||||| | |||||||||||||| || |||| | || || | Sbjct 418061 AGCCTGGACAGTAGCACCGAAGGCAACAGCTTCATCGGGGTTAATCGACTTGCAAG--GC 418118 Query 281822 TTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCT 281881 | || || ||||| || | ||||| | ||| ||||| || ||||| | ||||| Sbjct 418119 TCCTTGCCGTTGAAGAATTCCGAAAGCAATTGCTGCACCTTGGGGATACGGGTGGATCCA 418178 Query 281882 CCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTT 281941 || || | |||| ||| ||||| || || || || || || | || ||| Sbjct 418179 CCGACAAGCACAACTTCGTGCACTTGGCTCTTCGAAAGCTTCGAGTCACGAAGCACCTTT 418238 Query 281942 TCAACGGGTTCAA--GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTC 281999 || || ||||| | | | || || ||||| | || | ||||||||| ||| | Sbjct 418239 TCGACAGGTTCCATGGTCTTGCGG--AAGAAGTCGAAGCACATTTCTTCGAAACGAGCAC 418296 Query 282000 TAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTT- 282058 || | || || | |||| || ||||| | || |||| ||| || |||| Sbjct 418297 GGGTGATGGTCGAGTTGAAGTCAACACCATCGAAAAGCGAGTCAATTTCGAT-GTAGGCC 418355 Query 282059 TGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG 282118 || | ||| || || || | ||| |||||||||||||| || || | || | || | Sbjct 418356 TGGGCCGACGACGAAAGCGTACGCTTAGCACGTTCACAGGCAGTACGCAGACGGCGGA-- 418413 Query 282119 GCTTTTGCTGATTGATTCAA----ATCTGTTTTATAT--TTTCTCTTGAAATCTTCAACA 282172 || || ||| ||| | || | || | || | |||||| || | || Sbjct 418414 GC----GCACGTTGGTTCGACGTGATGTCCTTGCGGTGCTTGCGCTTGAATTCCGCGACG 418469 Query 282173 CACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACG 282230 | || | |||||||| ||||||||||||||||| ||||| | ||| | || | | Sbjct 418470 AAG--TGGTCGACAAGACGGTTATCAAAATCTTCACCACCCAAGTGAGTGTCACCAGCAG 418527 Query 282231 TAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCAC 282290 | || | |||| ||||| || ||||||| ||| || | ||||| || || | Sbjct 418528 TGGCCTTCACTTCGAAAATACCTTCTTCAATGCTCAAGAGCGACACATCGAAAGTACCGC 418587 Query 282291 CACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACG 282350 |||| | ||| || || || || || ||| | | || || || | ||| || | Sbjct 418588 CACCAAGATCGAAGATGAGCACGTTGCGTTC---GCCACCCTTCTTGTCCAAACCGTAGG 418644 Query 282351 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 282410 ||| ||| |||||||||||||| ||||| || | | || || | ||||||||| | Sbjct 418645 CAATAGCGGCAGCAGTTGGTTCGTTAATGATACGGAGCACGTTCATACCAGCAATGGCAC 418704 Query 282411 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 282470 | ||||| || ||||| || | ||| |||||||| ||||| || || || ||||| || | Sbjct 418705 CGGCATCCTTGGTGGCCTGACGTTGCGAATCGTTGAAATAGGCCGGGACGGTAATGACTG 418764 Query 282471 CATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCA 282530 ||| | || || || ||||| |||| || || ||||| || | | | || Sbjct 418765 CATTCTTGACCTCCTTACCAATGAAAGCTTCAGCGACTTCCTTCATCTTGATGAGGACCA 418824 Query 282531 TTGATGAAATTTGTTCTGG--AGAATATTGCTTGGATTCA-TTTTGATATGATACTTCAA 282587 | || || |||| |||||| ||| | ||| |||| |||| | | || | Sbjct 418825 TCGACGAGATTTCTTCTGGTTGGAACGT--CTTCTCTTCACCCTTGA-AGGTGACCGTGA 418881 Query 282588 AATATGGTTTATTACCA---ACATTAATAACTTTAAATGGCCAATATTTCATATCTGATT 282644 | ||| || | ||| || | || || |||||||| | || ||||| | | Sbjct 418882 TTTGTGGCTTGTCGCCAGCGCCAGGGGTGACCTTGAATGGCCAGTGCTTGATATCAGCCT 418941 Query 282645 GAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGG 282704 | || || ||||| | || | | ||| || || || || |||||||| | || ||| Sbjct 418942 GGACGATTGGGTCACTGAATTTGCGACCGATCAAACGCTTGGCATCAAAGACCGTGTTGT 419001 Query 282705 TTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAA 282764 | ||| | || |||| | ||||| ||||| || || ||| |||| || || || | Sbjct 419002 GCGCATTCATGGCGACTTGGTTCTTGGCGGCATCACCGATGAGACGTTCGGTATCGGTGA 419061 Query 282765 ATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTAC 282824 | | || || ||||| || || || |||||||| || || || || ||||| || Sbjct 419062 AAGCGACGTACGATGGGGTCGTACGGTTACCTTGGTCGTTGGCGATGATTTCCACACGGT 419121 Query 282825 CATTTTGCCATACACCTACACA 282846 | |||||||| ||||| || || Sbjct 419122 CGTTTTGCCACACACCGACGCA 419143 Score = 134 bits (148), Expect = 1e-25 Identities = 569/889 (64%), Gaps = 16/889 (2%) Strand=Plus/Minus Query 281966 AACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATT 282025 ||||| || | ||| | || || ||| || | |||| ||| ||| | |||||| Sbjct 429630 AACAAATCAGCACATAAATCCTCAAATCGTGCACGCGTAATAGTTGAGTTAAAGTCAATT 429571 Query 282026 CCTTCGAACAAAGAATCAACTTCAATCGTA-GTTTGAGTCGAAGAAGATAGTGCACGTTT 282084 |||||| ||||||| |||| |||||| ||| | || | ||| || | || || || Sbjct 429570 CCTTCGTACAAAGAGTCAATTTCAAT-GTATGCCTGGGCCGATGAGCTCACTGTGCGCTT 429512 Query 282085 AGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT-TTGCTGATT-GATTCAAATCT 282142 ||||| ||||| | || | ||| | ||||| | | ||| | | || |||||| Sbjct 429511 GGCACGCTCACAAGAAGTTCGTAGCCGACGTAACGATCGTTGAGCAGTCGA--CAAATCC 429454 Query 282143 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCT 282202 |||| || || | ||| || || | | | || || ||||| ||||| ||| Sbjct 429453 TTTTTGTACTTGCGCTTAAACTCGCTGGCGAAATACTCGACGAGTCGATTGTCAAAGTCT 429394 Query 282203 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 282262 ||||| ||||| | |||| || | || ||| | || | || | || ||||| | Sbjct 429393 TCACCACCCAAATGGGTATCGCCCGCAGTGGCTTTGACCTCAAATATGCCCTCTTCGATT 429334 Query 282263 GACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 282322 | |||||| | |||||| || ||||| |||| ||||| || | || || ||| Sbjct 429333 GTCAAAAGTGACACATCAAAAGTACCACCTCCCAAGTCAAAGATCAAGACGTTGTGTTCA 429274 Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 ||| | || || | |||||||| | || || || || || || || || || Sbjct 429273 CCACCTT---TCTTGTCCAATCCATACGCGATCGCTGCTGCGGTCGGCTCGTTGATCATA 429217 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | ||| ||||| | ||||| || || ||||| ||||||||||||| || || || Sbjct 429216 CGCAACACATTCAAGCCAGCGATGACCCCAGCATCCTTAGTGGCTTGTCGCTGCGAGTCA 429157 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 |||||||| || || || || || || || | | || | || || ||||| || Sbjct 429156 TTAAAATACGCCGGCACGGTGATCACAGCGTTCTTAACCTGCTTGCCGATATAGGCCTCG 429097 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GAGAATATTGCT 282560 || | | ||| || ||| | |||||| || |||| ||| | | ||| || | Sbjct 429096 GCGATCTCACGCATCTTGGTTAGCACCATTGACGAGATTTCTTCCGGCGTGAACGTT--T 429039 Query 282561 TGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC---AACATTAATAACTT 282617 | |||| || ||| ||| | | ||| || | || | | | || | Sbjct 429038 TTTCTTCACCTTTATAGCTTACAACGATTAGTGGCTTGTCGCCAGGACCGCCGGTGACCT 428979 Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677 | |||| ||||| | ||||| ||||| || | |||| |||| | | ||||| | Sbjct 428978 TGAATGACCAATGTCGAATATCCGATTGTACTTCTGGGTCGCTAAATTTGCGGCCAATAA 428919 Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737 ||| || || ||||| | || ||| | || | || | |||| || || |||| Sbjct 428918 GTCGCTTGGCGTCAAAGACCGTGTTGTGCGCGTTCATGGCGACCTGATTCTTAGCCGCAT 428859 Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797 | ||||||| | |||| || ||||||| || || || ||||| ||||| || || | Sbjct 428858 CACCAATCAATCGCTCTGAGTCGGTAAATGCCACGTAAGAGGGAGTAGTGCGGTTGCCCT 428799 Query 282798 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 ||||||| || || || || || | | |||||| ||||| || || Sbjct 428798 GATCATTGGCGATGATCTCGACGCGGTCGTGTTGCCACACACCAACGCA 428750 >seq4 Length=1007552 Score = 95.1 bits (104), Expect = 9e-14 Identities = 244/369 (66%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 282187 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 282246 ||| | ||| ||||||||||| ||||| | ||||| || ||| || |||| || Sbjct 588247 ACGCTGATCGAAATCTTCACCACCCAAGTGAGTATCACCGTTCGTGGCCAACACTTCAAA 588188 Query 282247 AAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAAT 282306 | || | |||| || | || |||||||| || ||||| || | |||||| | Sbjct 588187 CACACCGCCATCAATAGCGAGCAGTGTAACATCGAAAGTACCACCGCCAAGATCAAACAC 588128 Query 282307 AAGTACATTCATTTCTTTGTCTTG-GTTT--TTATCAAGACCATACGCAAAAGCAGCAGC 282363 ||| || ||| | || | |||| || | || || | ||| || |||| |||||||| Sbjct 588127 AAGCACGTTCTTCTC---GCCTTGCGTCTGCTTGTCGATACCGTAGGCAATCGCAGCAGC 588071 Query 282364 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 282423 ||| ||||| || || || | || | | ||| ||||| | || ||||| || || Sbjct 588070 AGTCGGTTCGTTGATGATACGTTGCACGGTCAAACCGGCAATGGTACCAGCATCCTTGGT 588011 Query 282424 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTC 282483 ||||| | || | ||| ||||| || ||||| || || | ||| ||||| ||||| Sbjct 588010 AGCTTGACGCTGAGCATCATTAAAGTAAGCAGGCACCGTCACAACAGCATCAAACACTTC 587951 Query 282484 TTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTG 282543 ||||| || | ||| | || ||||| || | || | ||| | || |||| Sbjct 587950 ACGACCAATGTAGCCTTCTGCGATGTGCTTCATCTTCGTCAACACCATGGCCGATATTTC 587891 Query 282544 TTCTGGAGA 282552 ||| || || Sbjct 587890 TTCAGGCGA 587882 >seq3 Length=1043435 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 432282 TTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCT 432341 ||| | ||||||||||| |||||| | || || ||||||| |||||||| ||| | || Sbjct 290468 TTGCGTGGTAAAGAAGGCCGTATTCGTGGCAACCTGATGGGCAAGCGTGTGGATTTTTCA 290409 Query 432342 GCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTC 432401 || |||||||| |||||| | ||||| || |||| | || ||||||| || || | Sbjct 290408 GCTCGTACAGTCATTACTGCAGATCCAAACATTGAAATTGATCAAGTTGGCGTCCCGCGA 290349 Query 432402 ATTATTGCGAAAAATCTTACTTTT 432425 ||||| | ||||| ||| || Sbjct 290348 TCCATTGCTATGAATCTGACTGTT 290325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740616653183280