Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq17 172 5e-38 seq22 125 7e-24 seq78 111 2e-19 seq27 84.2 2e-11 seq113 82.4 7e-11 >seq17 Length=584494 Score = 172 bits (190), Expect = 5e-38 Identities = 1161/1846 (63%), Gaps = 58/1846 (3%) Strand=Plus/Plus Query 147954 CGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGAC 148013 |||| ||||||||||| ||||| || || ||| ||||| ||||| ||| | | Sbjct 102966 CGCATGTAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTC 103025 Query 148014 ATGAGCGTGTACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAATGAA 148072 | | |||||||| |||| | || || | ||||||||| ||| ||| | Sbjct 103026 AACTTGCTCACCGTCGGGT-CGGCGATGTGCACGTTCAGCGACTGGCTTTGGCAGATGTA 103084 Query 148073 CGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCCGTCTT 148132 || ||||| ||||| |||| || | | |||| ||| || ||||| | || || Sbjct 103085 GGCACCACGATCAGCTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTTTT 103144 Query 148133 GTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGC------TGCACCGAGCCGCG 148186 |||| |||||| ||| ||||| ||| |||| ||||||||||| | Sbjct 103145 GTACTTTTCCTTGATTGCATCAGGAAT-----CGA-GCGCACTTTTTGCACCGAGCCACC 103198 Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG--AGCTCGATCAGGTCA 148244 || || || || ||||||| || |||| || | || ||||| || || Sbjct 103199 GTCATGCAAGATTTGGTTGCGCACCTCAG--GTGTCCAGATACCAAGTTCGATGAGCTCC 103256 Query 148245 TCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACG 148304 | || || |||| || || | | ||| || || ||||||||||| || |||| | Sbjct 103257 TTCATGAGGTACTTGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGGTTGTACATG 103316 Query 148305 TTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTG 148364 ||| ||| || || |||| || || || |||||||| ||||| || |||| ||||| Sbjct 103317 TTGGACGTGAATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTT 103376 Query 148365 GGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGC-TTCAG 148423 |||||| ||| | || ||| |||||||||| ||| | ||| ||| || |||| Sbjct 103377 GGCATGGGCGCCAACAACAGGGAGTTGCGCACACCATG-TTTAGCGACTTGAGCTTTCAA 103435 Query 148424 AGCCGCCCAGTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAAT 148480 || ||||| |||||||| | | || || || |||||| || |||| | || Sbjct 103436 TGCAGCCCAATCCCAGAGACCAGATGTTGGAGTGACACCCCACATATCAAACTGGAAGAT 103495 Query 148481 GCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTT- 148539 ||| ||| | ||| ||||||||| | ||||| || | | || || |||| Sbjct 103496 GCCCTTGCTCACAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTC 103555 Query 148540 CGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCG 148599 | || | || || | || || ||||| | ||| || ||| ||| |||| | Sbjct 103556 CATAGAT-GCTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTC 103614 Query 148600 CCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTA 148659 ||| ||| |||||| | || | | || | | |||||| || || | || || | Sbjct 103615 GCGCTTGCTCACTTTCGAAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCCTTGCA 103674 Query 148660 CGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT-CGAGCGGATAG 148718 | || | || | || || ||| | || || || | ||| || ||||||| Sbjct 103675 CACCAATACCCACAGGGCGATGTCGTAGATTAGA-TCGCTTGGCTTCTGGGATCGGATAG 103733 Query 148719 TGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGC 148778 | |||| || |||| ||||| ||||| | ||| | ||| || ||| | ||| Sbjct 103734 TAGTTGATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGC 103793 Query 148779 AATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTG 148838 | ||| | || ||| ||| || | || || || || || | ||| Sbjct 103794 TTCTGAAAGTTAAACACACCATTGTCGACAAATTTGGACAGTGCAATGGACGCCAAGTTG 103853 Query 148839 CACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCAT 148898 ||||| || || ||| || ||||||| |||| ||| ||||| || ||| | Sbjct 103854 CACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTGGAG 103913 Query 148899 TTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATG 148958 || ||||| ||| | ||||| ||||| ||||| || |||||||| |||||| Sbjct 103914 CGAATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCCTTGTAGAGCATG 103973 Query 148959 TACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGCG 149015 || ||| ||| ||||| | ||| | |||| || ||||| || | ||||| Sbjct 103974 TAGGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACC---ACAATTGTTGCGC- 104029 Query 149016 CGCACTTGCTGCTCGTAGCGACCC---TCCTG---CTCGTATAAAGTATACAGCCGCTCG 149069 |||| || || | ||| || |||| ||||| || |||| |||| Sbjct 104030 ----CTTGATGGTC-TTGCGGGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGCCTCG 104084 Query 149070 AACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTT-GTGCGGGCACATGAGCGACCA 149128 || | || || |||| ||| ||||| | | ||| | ||||| | || ||| Sbjct 104085 AATTCATCACCCCAGCAGTCGAACAGACC-AGTCGCTTCATTAGGGCAGAAAAGACTCCA 104143 Query 149129 CACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAG 149188 | |||||| || | ||| |||||||| |||| ||| || | ||| | ||||| | || Sbjct 104144 CTCGCCGTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAG 104203 Query 149189 GT--CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAAT 149246 | || || | || || ||| || || | || | || | ||| Sbjct 104204 ATCACGTGCACGATGAAG--TTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAAT 104261 Query 149247 ATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCC 149303 | ||| || ||||||||||| | || | || | || |||||||||||| || || Sbjct 104262 ACGTCGGCATGCCACGGCTCCAAATAGATTGCAAACGACCCCTTGCGCTTGCCACCACCT 104321 Query 149304 TGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCA 149363 || || |||| || | ||| || ||||| || | |||||| |||| || ||| Sbjct 104322 TGATCAACGTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGAC 104381 Query 149364 GTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCG 149423 ||||| || ||| | ||| || ||| || | ||||||| | ||| |||| Sbjct 104382 GTGCCATTTGTACCACGGATGTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATGCCG 104441 Query 149424 ATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCG 149483 || || || | |||| |||||| ||||| | ||| || ||| |||||||| Sbjct 104442 ATACCCCCTGCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCA 104501 Query 149484 ATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCG 149543 || ||| | ||||| || | || ||||| ||| ||| || | || || Sbjct 104502 ATAGAATCGTCTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCT 104561 Query 149544 GCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGAC 149603 || |||| || || ||||||| || || | | ||| ||| |||| | Sbjct 104562 GCGTTAAACAGTGTTGGTGTGGCGTGCGTGAAGAACGAGAGCGACATGTACTCATACGTC 104621 Query 149604 TCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGC 149663 || ||||| | | || || || ||||||||||| ||||| ||||| | ||| ||| Sbjct 104622 TCAAGCACCAGCTTGATATCTTCTTTATGGATGCCTACAGCGACACGCATGATCATTTGC 104681 Query 149664 TGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTT--TTCTAGTGTCT 149721 |||||||| || |||||| || | || || || || | || || |||| Sbjct 104682 TGCGGTCGTTCGCACACTTTCCCACCCACACGGAATAAATA--CGATCGCTCAAGCGTCT 104739 Query 149722 TGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 || |||||||||| | ||| |||||||| ||| ||||| ||||| Sbjct 104740 TGAAGCCAAAGTAATCGTATTCAAAGTCACGGTCGTGGATGATGGC 104785 >seq22 Length=480975 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| | ||||| |||||||| || Sbjct 154031 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCA-TCCTCAAGCTGCTTTCC 154089 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| || ||||| || |||||||||||||||||||| |||||||| || Sbjct 154090 AGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTT 154149 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || ||||| || || ||||| | |||| ||| || || || | || Sbjct 154150 GACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGTCTTCCCCGTTAATGT 154209 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 154210 CTTCACAAAGATCTGCAT 154227 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| | ||||| |||||||| || Sbjct 171849 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCA-TCCTCAAGCTGCTTTCC 171791 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| || ||||| || |||||||||||||||||||| |||||||| || Sbjct 171790 AGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTT 171731 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || ||||| || || ||||| | |||| ||| || || || | || Sbjct 171730 GACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGTCTTCCCCGTTAATGT 171671 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 171670 CTTCACAAAGATCTGCAT 171653 Score = 114 bits (126), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || || || || ||||||||||| | || || |||| ||| || |||||||| | Sbjct 153575 GTCGATTCCTTTTGAATATTGTAATCACTCAAAGT--ACGACCGTCTTCCAGCTGCTTAC 153632 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| ||||||| || || || || ||||| || ||||||||||| |||||| |||| Sbjct 153633 CCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCT 153692 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| | ||| | || ||||| || | |||| ||| ||||| |||| | Sbjct 153693 TCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACG 153752 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 153753 TCTTCACGAAGATCTGCAT 153771 Score = 114 bits (126), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || || || || ||||||||||| | || || |||| ||| || |||||||| | Sbjct 172077 GTCGATTCCTTTTGAATATTGTAATCACTCAAAGT--ACGACCGTCTTCCAGCTGCTTAC 172020 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| ||||||| || || || || ||||| || ||||||||||| |||||| |||| Sbjct 172019 CCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCT 171960 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| | ||| | || ||||| || | |||| ||| ||||| |||| | Sbjct 171959 TCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACG 171900 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 171899 TCTTCACGAAGATCTGCAT 171881 >seq78 Length=145407 Score = 111 bits (122), Expect = 2e-19 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || || || ||||| || ||||| || ||||||||||| |||| Sbjct 113065 TGCTTGCCAGCAAAGATCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATC 113124 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 |||||||||| | |||| |||| | || |||||||| | |||| ||| ||||| Sbjct 113125 TTTTGCTTGACGTTGTCAATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCC 113184 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGCTTAT 133667 || |||||||| ||||| |||||||| ||||| Sbjct 113185 GTAAGAGTTTTGACGAAGATCTGCAT--CTTAT 113215 >seq27 Length=441917 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 133557 CCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCG 133616 ||||||||||| |||||||||||||| | |||| |||| | |||||||| || Sbjct 63748 CCTTCCTTGTCCTGGATCTTTTGCTTGACATTGTCAATGCTGTCCGATGGCTCCACATCC 63807 Query 133617 ACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| ||| ||||| || || ||||| |||||||||||||| Sbjct 63808 AATGTGATGGTCTTGCCCGTGAGGGTTTTCACGAAAATCTGCAT 63851 >seq113 Length=36633 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | || || |||||||| || || || || ||||||||| Sbjct 6077 TCTTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCCTTG 6136 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || || || ||||||| | |||| || ||| | ||||| ||||||| |||| | Sbjct 6137 TCCTGAATTTTCTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCGACGTCGAGCGTGATG 6196 Query 133626 GTTTTGCC 133633 ||||| || Sbjct 6197 GTTTTACC 6204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419108027200