Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq17 125 2e-23 seq3 86.0 1e-11 >seq17 Length=584494 Score = 125 bits (138), Expect = 2e-23 Identities = 177/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---A 110742 |||| || ||||| | || ||||| |||||||| || || ||||||||||| | Sbjct 104370 TTGTGCCTATGTTGCGTGTGTTCAATGACACTGCTCGTTACGTTGATCAAGGTGGTGGCA 104311 Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 || | || || || ||||| |||||| | || || |||||| | || ||||||| ||| Sbjct 104310 AGCGCAAGGGGTCGTTTGCAATCTATTTGGAGCCGTGGCATGCCGACGTATTTGAGTTCC 104251 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 | || | | || ||||| || |||| || | ||||||||| | ||||| || | Sbjct 104250 TGGATTTGAGGAAGAATCACGGTAATGAACTTCATCGTGCACGTGATCTGTTTTACGCCA 104191 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGT 110922 ||||||| ||||||| |||||||| ||||| ||| || ||| |||| |||| | | Sbjct 104190 TGTGGATCCCAGATTTGTTCATGAAGCGTGTGGAAGCCAACGGCGAGTGGAGTCTTTTCT 104131 Query 110923 GTCCTCAT 110930 | ||| || Sbjct 104130 GCCCTAAT 104123 >seq3 Length=1043435 Score = 86.0 bits (94), Expect = 1e-11 Identities = 123/168 (73%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||| |||| ||| | || |||||||| || |||||||| || ||||| ||| Sbjct 290135 GATTTGGTATTGTTTAATCGTCAGCCATCACTCCACAAAATGTCAATTATGGCACATCGT 290076 Query 305384 GTCAAAGTATTAT-CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCT---TA 305439 || ||||| || |||| | |||||| || || ||| | || | |||| || || Sbjct 290075 GTAAAAGTTTTTGACTGG-TCGACATTCCGTTTGAATTT--GTCGGT-TACGTCTCCGTA 290020 Query 305440 TAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||| ||||||||||| || ||||||||| | || || || ||||| Sbjct 290019 CAATGCCGATTTTGATGGTGACGAAATGAATCTTCACGTGCCACAATC 289972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186808542309080