Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq22 118 7e-22 seq27 109 4e-19 seq78 104 2e-17 >seq22 Length=480975 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || || || ||| ||||| ||||| || ||| Sbjct 153772 ACCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCT 153831 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || ||||| || ||||| || |||||||||||||| ||||| | || Sbjct 153832 CAACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGG 153891 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||||| || ||| |||| ||| | | ||| | |||| Sbjct 153892 AATACCTTCCTTATCTTGGATTTTTTGCTTC-ACATTGTCAATAGAGTCCGAGGGCTCCA 153950 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || |||||||| || || ||||| || |||||||||||||| Sbjct 153951 CATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 153999 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| || ||||| || | || ||| || || |||||||| ||| Sbjct 171880 ACCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCT 171821 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | || ||||| ||||| || | ||| ||||||||| | || Sbjct 171820 CAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGG 171761 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || ||||| | ||| || | | |||| | ||| | Sbjct 171760 GATGCCTTCCTTGTCTTGAATCTTTTGTTTGA-CATTATCGATCGAGTCGGACGGTTCGA 171702 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| | ||||| || || || ||||| || || ||||||||||||||| Sbjct 171701 CGTCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 171652 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| || ||||| || | || ||| || || |||||||| ||| Sbjct 154001 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 154060 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || || | || ||||| ||||| || | ||| ||||||||| | || Sbjct 154061 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 154120 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || ||||| | ||| || | | |||| | ||| || Sbjct 154121 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGA-CATTATCGATCGAGTCGGACGGTTCGAC 154179 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| | ||||| || || || ||||| || || ||||||||||||||| Sbjct 154180 GTCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 154228 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | |||||| || | || || || || || || || ||| Sbjct 154228 ACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCT 154287 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || |||| |||| || ||||| ||||||||||||||||| ||||| | || Sbjct 154288 CAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGG 154347 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||| ||||| ||| || | ||| | | |||| | ||| | Sbjct 154348 AATACCTTCCTTATCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCGGACGGTTCGA 154406 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 |||| | |||||| || || || || | || || || ||||||||||| || Sbjct 154407 CGTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCATTGT 154458 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | |||||| || | || || || || || || || ||| Sbjct 171652 ACCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCT 171593 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || |||| |||| || ||||| ||||||||||||||||| ||||| | || Sbjct 171592 CAAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGG 171533 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||| ||||| ||| || | ||| | | |||| | ||| | Sbjct 171532 AATACCTTCCTTATCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCGGACGGTTCGA 171474 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 |||| | |||||| || || || || | || || || ||||||||||| || Sbjct 171473 CGTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCATTGT 171422 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || | || || ||||| || |||||||| Sbjct 153545 CCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTC 153604 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || |||| |||| || || || |||||||| | ||| || |||||| | || Sbjct 153605 AAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGA 153664 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | |||||| ||||| || ||||| |||| | | |||| | ||| | |||||| Sbjct 153665 ATACCTTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCAATAGAGTCCGAAGGTTCCAC 153723 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || ||||| || || |||||||||||| Sbjct 153724 ATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCATA 153772 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || | || || ||||| || |||||||| Sbjct 172107 CCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTC 172048 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || |||| |||| || || || |||||||| | ||| || |||||| | || Sbjct 172047 AAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGA 171988 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | |||||| ||||| || ||||| |||| | | |||| | ||| | |||||| Sbjct 171987 ATACCTTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCAATAGAGTCCGAAGGTTCCAC 171929 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || ||||| || || |||||||||||| Sbjct 171928 ATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCATA 171880 >seq27 Length=441917 Score = 109 bits (120), Expect = 4e-19 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || ||| |||||||| || || |||||||| || || |||||||| || | Sbjct 63537 CACCACCACGCAGACGCAACACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCG 63596 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 | || ||||| |||| |||||||| || || ||||| |||| |||||||||||| Sbjct 63597 ACAGCGTGCGGCCGTCTTCCAATTGCTTGCCAGCAAAGATCAGACGCTGCTGATC 63651 >seq78 Length=145407 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 ||||| |||||||| || || || ||||| | || |||||||| || || ||||| ||| Sbjct 113023 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 113082 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | ||| ||||||||| | || | ||||| ||||| || || || || | | | ||| Sbjct 113083 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTC 113141 Query 33682 ACGG-TGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | | |||| | ||||||||| | |||||| || || || || | ||||| || || Sbjct 113142 AATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAA 113201 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 113202 GATCTGCAT 113210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702878297600