Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 257 2e-62 seq47 96.9 5e-14 seq17 95.1 2e-13 >seq2 Length=1145976 Score = 257 bits (284), Expect = 2e-62 Identities = 416/586 (71%), Gaps = 12/586 (2%) Strand=Plus/Plus Query 1455730 CGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGA--TATGGGAAATG 1455787 ||| ||||| || || ||||| ||||||| |||| | | |||| | |||| ||| Sbjct 131690 CGAGAACCCAAATCGATTTGTGTTGTTCCCAATCCAAGAGC--CGGAAGTGTGGGCCATG 131747 Query 1455788 TACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCC-GACA 1455846 ||| || ||||| || || ||||||||||| || || | || | || || ||| Sbjct 131748 TAC-AAGAAGGCTGAAGCGAGTTTTTGGACCGCTGAAGAACTGGATTT-GGTGCATGACC 131805 Query 1455847 CGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCT 1455906 | ||||||| | ||| |||| |||| ||| ||||||||||||||| | || | Sbjct 131806 TGAAGGACTGGGTCAAGATGACCGACAACGAACGCTTCTTCATCAAGCACGTCTTGGCGT 131865 Query 1455907 TTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAG 1455966 | ||| || ||||||||||| || ||| ||| ||||| || || | | || Sbjct 131866 TCTTT-GCTGCCAGCGATGGGATTGTGAACGAAAACCTTGCGATGAATTTCAGTAGTGAA 131924 Query 1455967 GTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCAC 1456026 || ||| |||| ||||| || | |||||||| |||||||||||||| |||||||| ||| Sbjct 131925 GTGCAAGTGCCTGAGGCGCGCTGCTTTTACGGATTCCAGATCGCCATTGAAAACATTCAC 131984 Query 1456027 TCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCAC 1456086 || ||| |||||||| |||| ||||| ||| |||| |||||| ||||||||||||| Sbjct 131985 TCCGAAGTGTACTCGCTTTTGATTGACACATACATCAAAGACCCGACCGAGAAGGACCAC 132044 Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146 | | || |||||||| || | || | |||| || |||||| ||||| ||||| Sbjct 132045 TTGCTACGTGCCATCGAAACCATCCCATGCGTGACCAAGAAGGCCAGTTGGGCATTGAAG 132104 Query 1456147 TGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCG 1456205 ||| | || | | || | | || ||| || ||| | | | ||||| || |||| Sbjct 132105 TGGTGCGAC-TCGCGCGCTGCTGC-CTATGCTGAACGGATTTTGGCATTTGCGGCTGTCG 132162 Query 1456206 AGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCA 1456265 |||| ||||| || ||||| |||||| ||||||| ||| | |||||||| || |||| Sbjct 132163 AGGGAATCTTCTTTTCGGGTTCCTTCTGCTCCATCTTCTGGTTGAAGAAGCGTGGGCTCA 132222 Query 1456266 TGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 |||| |||| || | || || ||| | |||||||| || |||| Sbjct 132223 TGCCTGGTC-TCAGTTTCTCGAATGAACTCATCAGTCGTGATGAAG 132267 Score = 140 bits (154), Expect = 5e-27 Identities = 235/330 (71%), Gaps = 10/330 (3%) Strand=Plus/Plus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTC-GA 1456505 ||| ||||||||||||||||| || || | ||| | | |||||||||||||| | || Sbjct 132266 AGGGTTGCACTGTGACTTTGCGTGCTTGATGTACTCCAAGCTCGTCAACAAGCTTCCGGA 132325 Query 1456506 CCGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 ||| | || | | ||||| | || |||||| ||| ||||| || || |||| | Sbjct 132326 GTCACGCGTGCACG-AAATCATTGGTGACGCCGTCACGATTGAGAAGGAATTCGTCAAGG 132384 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAA 1456625 | ||||| || |||| | || ||||||||| | | |||| ||||| |||||||||||| Sbjct 132385 ATTCGCTCCCTGTGGAATTGATTGGCATGAACTCGA-CGCTGATGTGTCAGTACATTGAA 132443 Query 1456626 TTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC-- 1456683 || ||| || || || |||| ||||| || || ||| |||| ||| | Sbjct 132444 TTCTGT-GCTGATCGTTTGCTACATGCGCTTGG-TGTATCCAAGATCTAC--AACGCCAA 132499 Query 1456684 CAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCG 1456743 ||||| || |||||||| ||||||| || ||||||||||||| || || ||| Sbjct 132500 GAACCCTTTTGACTGGATGGACATGATCTCACTGCAGGGCAAGACCAATTTCTTTGAGAA 132559 Query 1456744 CCGCGT-GGCGAGTACGCCAAGGCCGGCGT 1456772 || || || || ||| ||||||| ||||| Sbjct 132560 GCGTGTGGGTGAATACTCCAAGGCTGGCGT 132589 >seq47 Length=302490 Score = 96.9 bits (106), Expect = 5e-14 Identities = 176/255 (69%), Gaps = 21/255 (8%) Strand=Plus/Minus Query 724889 TTATGCCTCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGT 724948 ||||||||||||| |||||||||||||| ||||||||||| ||||| Sbjct 119355 TTATGCCTCGTAC---------ATCTACAAGGTGCTTCGTCAGGTGCACCCTGAAACCGG 119305 Query 724949 TGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGA 725008 | ||| | | | | | |||||||||||||||||||| ||||||| || |||| Sbjct 119304 T-----ATCAGCAAGCGTGGC-ATGTCGATCATGAACTCGTTCATCAACGATATTTTCGA 119251 Query 725009 CCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGA--TCGGC 725066 || || | | || ||||| || | |||| ||||||| || ||| | | | Sbjct 119250 GCGTATTGCTTCGGAAGCCGGCAAGTTGTCTCGCTACAACAAG---AAGTCGACTTTGTC 119194 Query 725067 -ACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGC 725125 | ||||| |||||||| || ||||| |||| ||| || ||| |||| | |||||| Sbjct 119193 GAGCCGCGAAATCCAGACGGCTGTGCGTTTGATGCTGCCTGGTGAATTGGCGAAGCACGC 119134 Query 725126 CGTCTCCGAGGGCAC 725140 ||| || || ||||| Sbjct 119133 CGTGTCGGAAGGCAC 119119 Score = 87.8 bits (96), Expect = 3e-11 Identities = 174/255 (68%), Gaps = 21/255 (8%) Strand=Plus/Plus Query 724889 TTATGCCTCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGT 724948 ||||||||||||| |||||||||||||| ||||||||||| ||||| Sbjct 199153 TTATGCCTCGTAC---------ATCTACAAGGTGCTTCGTCAGGTGCACCCTGAAACCGG 199203 Query 724949 TGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGA 725008 | ||| | | | | | |||||||||||||||||||| ||||||| || |||| Sbjct 199204 T-----ATCAGCAAGCGTGGC-ATGTCGATCATGAACTCGTTCATCAACGATATTTTCGA 199257 Query 725009 CCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGA--TCGGC 725066 || || | | || ||||| || | |||| ||||||| || ||| | | | Sbjct 199258 GCGTATTGCTTCGGAAGCCGGCAAGTTGTCTCGCTACAACAAG---AAGTCGACTTTGTC 199314 Query 725067 -ACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGC 725125 | ||||| |||||||| || ||||| |||| | | || ||| |||| | |||||| Sbjct 199315 GAGCCGCGAAATCCAGACGGCTGTGCGTTTGATGCTTCCTGGTGAATTGGCGAAGCACGC 199374 Query 725126 CGTCTCCGAGGGCAC 725140 || || || ||||| Sbjct 199375 TGTGTCGGAAGGCAC 199389 Score = 87.8 bits (96), Expect = 3e-11 Identities = 174/255 (68%), Gaps = 21/255 (8%) Strand=Plus/Minus Query 724889 TTATGCCTCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGT 724948 ||||||||||||| |||||||||||||| ||||||||||| ||||| Sbjct 203657 TTATGCCTCGTAC---------ATCTACAAGGTGCTTCGTCAGGTGCACCCTGAAACCGG 203607 Query 724949 TGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGA 725008 | ||| | | | | | |||||||||||||||||||| ||||||| || |||| Sbjct 203606 T-----ATCAGCAAGCGTGGC-ATGTCGATCATGAACTCGTTCATCAACGATATTTTCGA 203553 Query 725009 CCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGA--TCGGC 725066 || || | | || ||||| || | |||| ||||||| || ||| | | | Sbjct 203552 GCGTATTGCTTCGGAAGCCGGCAAGTTGTCTCGCTACAACAAG---AAGTCGACTTTGTC 203496 Query 725067 -ACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGC 725125 | ||||| |||||||| || ||||| |||| | | || ||| |||| | |||||| Sbjct 203495 GAGCCGCGAAATCCAGACGGCTGTGCGTTTGATGCTTCCTGGTGAATTGGCGAAGCACGC 203436 Query 725126 CGTCTCCGAGGGCAC 725140 || || || ||||| Sbjct 203435 TGTGTCGGAAGGCAC 203421 >seq17 Length=584494 Score = 95.1 bits (104), Expect = 2e-13 Identities = 332/511 (65%), Gaps = 28/511 (5%) Strand=Plus/Minus Query 262915 CATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATC 262974 ||||| |||||||||| || | |||||| |||||| ||||| |||| | |||||| Sbjct 103414 CATGGTGTGCGCAACTCCCTGTTGTTGGCGCCCATGCCAACGGCGTCGACTGCTCAGATC 103355 Query 262975 CTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTC 263034 ||||||| | || | | ||| ||||| |||||| |||| || ||||||||| Sbjct 103354 TTGGGCAATAATGAATCCATTGAGCCATTCACGTCCAACATGTACAACCGTCGCGTGCTC 103295 Query 263035 TCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTG 263094 | || || ||||| | |||||| |||| | ||| | | | | || | Sbjct 103294 GCTGGTGAATTTACGATCGTCAACAAGTACCTCATGAAGGAGCTCATCGAACTTGGTATC 103235 Query 263095 TGGACGCCCGACTTTCGCGACCGGCTCATTGCGGCACAG-GGCTCGGTGCA----GGGCT 263149 ||||| || || | ||| ||| || |||| || | ||||||||||| | || Sbjct 103234 TGGACACCTGAGGTGCGCAACCAAATC-TTGCATGACGGTGGCTCGGTGCAAAAAGTGCG 103176 Query 263150 TTGACGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGC 263209 | ||| | || | |||||| | ||| || |||||||| | Sbjct 103175 CT-----CGA-----TTCCTGATGCAATCAAGGAAAAGTACAAAACAGTGTGGGAAATCA 103126 Query 263210 C-CAACCGG--GTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCC 263266 ||| || ||| | ||| |||| || || || | |||| || ||| |||| Sbjct 103125 AGCAAAAGGTCGTGT---TAGATTTGGCAGCTGATCGTGGTGCCTACATCTGCCAAAGCC 103069 Query 263267 AGTCGCTCAACCTGTACCTCGCCGACCCGACGGCCGAGAGCA---TCACGTCGATGCACG 263323 ||||||| ||| || || |||||||||||||| | ||||| | || ||||||||| Sbjct 103068 AGTCGCTGAACGTGCACATCGCCGACCCGACG---GTGAGCAAGTTGACATCGATGCACT 103012 Query 263324 CCTATGCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTG 263383 || |||||| || || || ||||| ||||||||||| |||| || || | Sbjct 103011 TTTACGCGTGGAAGCGAGGACTTAAGACCGGCATGTACTACATGCGTGGGCGACCGAAGG 102952 Query 263384 CCAACGCCATTCAATTCACCGTCGATCAGGC 263414 || | |||||||| || || ||||| |||| Sbjct 102951 CCGATGCCATTCAGTTTACGGTCGACAAGGC 102921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177784193485360