Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq22 125 6e-24 seq78 107 2e-18 >seq22 Length=480975 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || || || ||||||||||| |||||||| ||| || || |||| || Sbjct 153562 CACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTC 153621 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||||||||||||| || | || || || || | ||||| | ||||||||| Sbjct 153622 CAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTG 153681 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 |||||| ||||||| |||| | | | ||| | |||||| |||| ||||| || | Sbjct 153682 GATCTTCTGCTTCA-CGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCT 153740 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || ||||| || ||||| || |||||||| Sbjct 153741 TGCCAGTCAACGTCTTCACGAAGATCTGCAT 153771 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || || || |||||| ||||||||||| ||| | Sbjct 154001 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 154060 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || |||||||| || ||||| || | || ||||| || | ||| Sbjct 154061 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 154120 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||| |||||||| || | | | | | || |||| || ||| || Sbjct 154121 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACG 154180 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || ||||| || || |||||||| |||||||| Sbjct 154181 TCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 154227 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || || || |||||| ||||||||||| ||| | Sbjct 171879 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 171820 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || |||||||| || ||||| || | || ||||| || | ||| Sbjct 171819 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 171760 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||| |||||||| || | | | | | || |||| || ||| || Sbjct 171759 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACG 171700 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || ||||| || || |||||||| |||||||| Sbjct 171699 TCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 171653 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || || || ||||||||||| |||||||| ||| || || |||| || Sbjct 172090 CACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTC 172031 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||||||||||||| || | || || || || | ||||| | ||||||||| Sbjct 172030 CAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTG 171971 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 |||||| ||||||| |||| | | | ||| | |||||| |||| ||||| || | Sbjct 171970 GATCTTCTGCTTCA-CGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCT 171912 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || ||||| || ||||| || |||||||| Sbjct 171911 TGCCAGTCAACGTCTTCACGAAGATCTGCAT 171881 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || || || ||||| ||||| || || ||| ||| || || |||| || Sbjct 154246 CACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTC 154305 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || ||||| ||||| ||||| || || | ||||| | ||||| ||| Sbjct 154306 CAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTG 154365 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||| ||||||| |||| | | || |||| || ||| || |||| |||||| || | Sbjct 154366 AATCTTCTGCTTCA-CGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCT 154424 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 | || || | || ||||| || ||||||||| Sbjct 154425 TGCCGGTGAGTGTCTTCACGAAGATCTGCATT 154456 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || || || ||||| ||||| || || ||| ||| || || |||| || Sbjct 171634 CACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTC 171575 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || ||||| ||||| ||||| || || | ||||| | ||||| ||| Sbjct 171574 CAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTG 171515 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||| ||||||| |||| | | || |||| || ||| || |||| |||||| || | Sbjct 171514 AATCTTCTGCTTCA-CGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCT 171456 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 | || || | || ||||| || ||||||||| Sbjct 171455 TGCCGGTGAGTGTCTTCACGAAGATCTGCATT 171424 >seq78 Length=145407 Score = 107 bits (118), Expect = 2e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 ||||||| |||||||| || | | || || | || |||| ||||| || ||||| | Sbjct 113021 CCTTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGA 113080 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| || ||||| || | ||||| | ||||||||| |||||||||||| | |||| Sbjct 113081 TCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGA-CGTTG 113139 Query 35667 CCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 || | |||| | |||||| |||| |||||| || || ||||| | |||||| || Sbjct 113140 TCAATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACG 113199 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 113200 AAGATCTGCAT 113210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792022222400