Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq22 145 8e-30 seq78 118 1e-21 seq113 100 3e-16 >seq22 Length=480975 Score = 145 bits (160), Expect = 8e-30 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554 || ||||| || | ||| | || || ||||| |||||||||||||||| |||| ||| | Sbjct 154010 AGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAAC-GTGCG 154068 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || ||||| || || ||||| || | ||| |||||||| || || |||||||| Sbjct 154069 ACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTC 154128 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || |||||||| ||||||||||| || | | |||||||| ||| ||||| | || Sbjct 154129 CTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGT 154188 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || ||||| || || || || || ||||| Sbjct 154189 GATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 154227 Score = 145 bits (160), Expect = 8e-30 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554 || ||||| || | ||| | || || ||||| |||||||||||||||| ||||| || | Sbjct 171870 AGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACG-TGCG 171812 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || ||||| || || ||||| || | ||| |||||||| || || |||||||| Sbjct 171811 ACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTC 171752 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || |||||||| ||||||||||| || | | |||||||| ||| ||||| | || Sbjct 171751 CTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGT 171692 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || ||||| || || || || || ||||| Sbjct 171691 GATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 171653 Score = 134 bits (148), Expect = 1e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || || | ||| | ||| | || |||||||| ||||| || ||||||| Sbjct 154229 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 154288 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||| || ||||| || || ||||||||||||||||| ||||| || || Sbjct 154289 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 154348 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| || || || || ||| | | |||||||| ||| ||| Sbjct 154349 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 154408 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGTT 134725 || | || ||||| || ||||| | || || ||||| || |||||| | || || || Sbjct 154409 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCATTGTCTTCTTATT 154467 Score = 134 bits (148), Expect = 1e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || || | ||| | ||| | || |||||||| ||||| || ||||||| Sbjct 171651 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 171592 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||| || ||||| || || ||||||||||||||||| ||||| || || Sbjct 171591 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 171532 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| || || || || ||| | | |||||||| ||| ||| Sbjct 171531 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 171472 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGTT 134725 || | || ||||| || ||||| | || || ||||| || |||||| | || || || Sbjct 171471 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCATTGTCTTCTTATT 171413 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554 || || | ||| | ||| ||||| || |||||||| ||||| ||||||| ||||| || | Sbjct 153782 AGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACG-TGCG 153840 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || | ||| || || || |||||||||||||| ||||| || || || ||||| Sbjct 153841 ACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGGAATACCTTC 153900 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||| |||||||| || || ||| | | ||| || | ||||| || | ||| Sbjct 153901 CTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGT 153960 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| ||||| || || || || || || || || ||||| Sbjct 153961 AATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 153999 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| | || |||||||||||||| ||||| || | | || || Sbjct 153554 AGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGA 153613 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || |||||||| | ||| || ||||| || || || ||||| Sbjct 153614 CCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCC 153673 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || ||| | | ||| || | |||||| || | ||| Sbjct 153674 TTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTG 153733 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || ||||| || ||||| Sbjct 153734 ATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 153771 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| | || |||||||||||||| ||||| || | | || || Sbjct 172098 AGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTACGA 172039 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || |||||||| | ||| || ||||| || || || ||||| Sbjct 172038 CCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCC 171979 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || ||| | | ||| || | |||||| || | ||| Sbjct 171978 TTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAAGTG 171919 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || ||||| || ||||| Sbjct 171918 ATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 171881 >seq78 Length=145407 Score = 118 bits (130), Expect = 1e-21 Identities = 144/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 ||||||| ||||||||||| || ||| | || || | || ||||| ||||| | Sbjct 113021 CCTTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGA 113080 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||| |||||||| || || || ||||| || || || || ||||| ||||| || Sbjct 113081 TCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGT 113140 Query 134644 CCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 ||||| |||| || | ||||||||| || || ||||| || || || | |||||| ||| Sbjct 113141 -CAATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACG 113199 Query 134703 AAAATTTGCATTTT 134716 || || ||||| || Sbjct 113200 AAGATCTGCATCTT 113213 >seq113 Length=36633 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| ||||| ||||| |||| |||||||||||| || || || ||||| || Sbjct 6077 TCTTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCCTTG 6136 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || |||||||| || ||||| ||| | | ||| || | || |||||||| || ||| Sbjct 6137 TCCTGAATTTTCTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCGACGTCGAGCGTGATG 6196 Query 134679 GTTTTACC 134686 |||||||| Sbjct 6197 GTTTTACC 6204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396631105600