Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq58 87.8 3e-12 >seq58 Length=246340 Score = 87.8 bits (96), Expect = 3e-12 Identities = 249/380 (66%), Gaps = 2/380 (1%) Strand=Plus/Plus Query 161313 TCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAA 161372 ||||||| || || ||||||||| | ||||| | |||| ||||| || || |||| Sbjct 199152 TCTACCAAGCGTCAACCAGTGAGCTCTATGGCAAAGCGCAAGCTACACCGCAAAACGAAA 199211 Query 161373 CAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTG 161432 ||||| ||||| || ||||| || |||||| | || || | | || || |||| | Sbjct 199212 ACACACCATTCTATCCGCGATCACCGTATGGCATCGCCAAGCAGTTTGCGTACTGGAGCG 199271 Query 161433 TAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGT-AGTGGTATTCTATTCAACCAT 161491 | ||||||| | || || || ||| || ||| | ||| ||||| || ||||| Sbjct 199272 TCGTGAACTACCGTGAAGCGTACGGCATGTTTGC-AGTGAATGGCATTCTCTTTAACCAC 199330 Query 161492 GAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGT 161551 || ||||| |||| || || || || || ||||| || | | | | || Sbjct 199331 GAAAGTCCACGCAGGGGGCCAACGTTTGTCACACGCAAGATCACGCGCGCAGTTGTGCGC 199390 Query 161552 ATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGG 161611 ||| | || | | || ||||| ||| | || || || | || || || |||||| Sbjct 199391 ATTCACGCGGGTATTGACGAGTGTCTTTACATTGGCAACCTTGAATCGAGGCGCGATTGG 199450 Query 161612 GGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGAT 161671 |||||||| || || || ||| ||||||| ||| | || || || || || Sbjct 199451 GGTCATGCGCGGGATTACGTCGAGTGTATGTGGCGCATGCTGCAGCATGACGAACCCGAG 199510 Query 161672 GACTATGTGATTGCCACAGG 161691 || | ||| ||||||| || Sbjct 199511 GATTTCGTGGTTGCCACGGG 199530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729927045246400