Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 181 1e-40 seq17 132 7e-26 >seq2 Length=1145976 Score = 181 bits (200), Expect = 1e-40 Identities = 410/609 (67%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| ||||| || |||||||| || | || ||||| | ||| || | ||| || || | Sbjct 132297 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 132238 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCA 39727 | |||| |||||||| || |||||||| || | ||| || |||| |||| ||| | || Sbjct 132237 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGG-AGCAGAAGGAACCC 132179 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC- 39786 ||||||||||| || || || || |||||||| | || | || | || | | | Sbjct 132178 GAAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCG 132119 Query 39787 ----ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 | | | | ||||||| ||||||| || ||||| | || || || || |||| Sbjct 132118 CGCGAGTC-GCA-CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTT 132061 Query 39843 CTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902 | || ||| | | | | || || ||||| | ||||| || || || | Sbjct 132060 CGATGGCACGTAGCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAA 132001 Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962 | |||| ||| || || ||||||||||| || ||||| ||||||||||| || | | Sbjct 132000 GCGAGTACACTTCGGAGTGAATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGCG 131941 Query 39963 CTTCAGTAATTTGTACCTCTGAAC--AAAATCTTTCCGCCAAATTTTCATTCACTATTCC 40020 | |||| | ||| || || || ||| || | ||| | ||||| ||||| || || Sbjct 131940 CCTCAGGCACTTGCACTTCACTACTGAAATTCAT--CGCAAGGTTTTCGTTCACAATCCC 131883 Query 40021 ATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA 40080 ||| || || ||||| || ||||| || || || || || | ||| | | |||| Sbjct 131882 ATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCAT 131823 Query 40081 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGC 40140 || |||||| || | || | | ||| | ||||||||| |||||||| ||| Sbjct 131822 CTTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGC 131763 Query 40141 CTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200 || ||||| ||||||||| ||| | || | | ||| ||||| || | ||||||| Sbjct 131762 TTCAGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCG 131703 Query 40201 ATTTGGATT 40209 |||||| || Sbjct 131702 ATTTGGGTT 131694 >seq17 Length=584494 Score = 132 bits (146), Expect = 7e-26 Identities = 321/483 (66%), Gaps = 5/483 (1%) Strand=Plus/Plus Query 68721 AAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 68780 |||||| |||| | ||| | ||| |||| || || || |||| || | ||||| Sbjct 103283 AAATTCACCAGCGAGCACGCGACGGTTGTACATGTTGGACGTGAATGGCTCAATGGATTC 103342 Query 68781 ATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATT 68840 |||||| |||| || |||||||| || || |||||||| || |||| ||| | || Sbjct 103343 ATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAACAACAGGGAGTT 103402 Query 68841 TCTAAGACCATGTGTTATGATTTTATCTTTTAGATG-TTTCCAATCCCAAAGATCAGATG 68899 | | ||||||| | || || | |||| | ||| ||||||||| ||| |||||| Sbjct 103403 GCGCACACCATGTTTAGCGACTTGAGCTTTCA-ATGCAGCCCAATCCCAGAGACCAGATG 103461 Query 68900 GTACA---ACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTAT 68956 | | ||| ||| | ||| | || | || || || || || || || | | Sbjct 103462 TTGGAGTGACACCCCACATATCAAACTGGAAGATGCCCTTGCTCACAGGGGAGCCCTCGT 103521 Query 68957 ATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAAT 69016 | |||||||| || || | || | || ||||| | ||| || | || || || | Sbjct 103522 AAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGATGCTTCCATGGCTCCATAGT 103581 Query 69017 AAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAAT 69076 | | ||||| ||||| | ||| || | ||| | |||| ||| ||||| || | Sbjct 103582 ACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCACTTTCGAAGGGGAACC 103641 Query 69077 GTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCT 69136 | |||||||| ||||| ||||| || || || |||||||| | ||| | ||||| Sbjct 103642 CCATGAGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCGTA 103701 Query 69137 TATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGAT 69196 ||| || | | |||||||| || ||||| || || ||||| || | || || |||| Sbjct 103702 GATTAGATCGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTTCAGAT 103761 Query 69197 TTC 69199 ||| Sbjct 103762 TTC 103764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906395819200