Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 149 5e-31 >seq2 Length=1145976 Score = 149 bits (164), Expect = 5e-31 Identities = 305/443 (69%), Gaps = 13/443 (3%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || |||||||| |||||||| ||||| ||||| || || ||||| | | | | ||| Sbjct 131856 GTCTTGGCGTTCTTTGCTGCCAGCGATGGGATTGTGAACGAAAACCTTGCGA-TGAATTT 131914 Query 43910 GCGCAA-GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 | | ||||| ||| | || || || || || ||||| || || || || ||||| || Sbjct 131915 CAGTAGTGAAGTGCAAGTGCCTGAGGCGCGCTGCTTTTACGGATTCCAGATCGCCATTGA 131974 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 ||| ||||| || ||| ||||| ||| |||| || || ||||||||||| | ||| Sbjct 131975 AAACATTCACTCCGAAGTGTACTCGCTTTTGATTGACACATACATCAAAGACCCGACCGA 132034 Query 44029 GAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAG--CAGA 44085 |||| | | ||| | ||| || ||||| | || |||| | | || ||| ||| Sbjct 132035 GAAGGACCACTTGCTACGTGCCATCGAAACCATCCCATGCG--TGACCAAGAAGGCCAG- 132091 Query 44086 CTGGGCCCTTAAATGGATAAATTC---AAATGATTCTTTTGGAGAACGACTTGTCGCGTT 44142 ||||| | || ||| | || || | | | || ||||| || | || || Sbjct 132092 TTGGGCATTGAAGTGGTGCGACTCGCGCGCTGCTGCCTATGCTGAACGGATTTTGGCATT 132151 Query 44143 TGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGA 44201 ||| | ||| || || || |||||||| || || || ||| |||| || ||||| |||| Sbjct 132152 TGCGGCTGTCGAGGGAATCTTCTTTTCGGGTTCCTTCTGC-TCCATCTTCTGGTTGAAGA 132210 Query 44202 AACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCT 44261 | || || | |||||||| | | || || ||||| | || |||||||||||||| | Sbjct 132211 AGCGTGGGCTCATGCCTGGTCTCAGTTTCTCGAATGAACTCATCAGTCGTGATGAAGGGT 132270 Query 44262 TACATTGCGATTTTGCTTGCTTG 44284 | || || || ||||| |||||| Sbjct 132271 TGCACTGTGACTTTGCGTGCTTG 132293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454643681400