Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq17 132 4e-26 seq22 129 5e-25 >seq17 Length=584494 Score = 132 bits (146), Expect = 4e-26 Identities = 787/1250 (63%), Gaps = 61/1250 (5%) Strand=Plus/Plus Query 130765 AAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTC 130824 ||| |||||||| || ||||| | ||| |||||| |||||| || |||| |||||| Sbjct 103283 AAATTCACCAGCGAGCACGCGACGGTTGTACATGTTGGACGTGAATGGCTCAATGGATTC 103342 Query 130825 GTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATT 130884 || ||||| || || || || || | || || |||||| |||| || || || || Sbjct 103343 ATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCCAACAACAGGGAGTT 103402 Query 130885 ACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGA---GAGGT 130941 || | ||| || | | || || |||||| || |||||||||| ||| || || Sbjct 103403 GCGCACACCATGTTTAGCGACTTGAGCTTTCAATGCAGCCCAATCCCAGAGACCAGATGT 103462 Query 130942 AGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTC 131001 || ||||| |||||||||||| || | ||||| || || | || | || Sbjct 103463 TGGAGTGACACC---CCACATATCAAACTGGAAGATGCCCTTGCTCACAGGGGAGCCCTC 103519 Query 131002 GAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTA 131061 | | | ||| || || | | || || || | ||||||| ||||| || Sbjct 103520 GTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGATGCTTCCATGGCTCCATA 103579 Query 131062 ATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAA 131121 || | ||||| ||| || || || |||| | |||||| | || ||| | || || Sbjct 103580 GTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGCTCACTTTCGAAGGGGAA 103639 Query 131122 TTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTT 131181 ||| | |||||| || || || | || || | |||| ||||| || | |||| Sbjct 103640 CCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACCAATACCCACAGGGCGATGTCG 103699 Query 131182 TAAATTACATTTACGCGAACATTC---GGTGGGATAAAGGTTAATGTCAATTATTTTGTT 131238 || |||| || ||| ||| | | ||||| ||| || ||||| | ||||| Sbjct 103700 TAGATTAGAT---CGCTTGGCTTCTGGGATCGGATAGTAGTTGATATCAATGACCTTGTT 103756 Query 131239 TAAATTGCGCACTACAATTTGTGTGACGCTTTTC----AATTTGTCGAAATCAAACGTGC 131294 | ||| | ||||| | |||| |||| | || | || | |||| | Sbjct 103757 CAGATTTCTGGTCACAATCTTCGTGA----TTTCGTAGAGCTTCTGAAAGTTAAACACAC 103812 Query 131295 CAGTTTCGAGGTTTACAAATTGATTTACA---CATATTGACGCCAGATTACAAACTGCCG 131351 || | ||| ||||||| | ||| || || ||||||| || || || || Sbjct 103813 CATTGTCG------ACAAATT--TGGACAGTGCA-ATGGACGCCAAGTTGCACACCGCGA 103863 Query 131352 TTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGC 131411 |||||| | |||| || | || |||||| |||||| || |||| Sbjct 103864 CTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTGGAGCGAATAGTGC 103923 Query 131412 CCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTG 131470 |||| ||||| ||||| | | || | |||| |||||||| | ||||||||| ||| Sbjct 103924 CCAAGTTTTGCTGATT-CGACTTGCGATTGCATGCATCCTTGTAGAGCATGTAGGGTGTG 103982 Query 131471 CCCGTTTCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACAATTGAT 131528 || ||||||| |||| || | |||| |||| | | || | | || ||||| Sbjct 103983 CCGGTTTCGATCTGAGCGTCCAAAATG--GCGAACCACAATTGTTGCGC-----CTTGAT 104035 Query 131529 ATTTGTATTGGCC--GC---GTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGC- 131582 | | |||| || | |||||| || |||||| | || || | | | Sbjct 104036 GGTCTTGCGGGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGCCTCGAATTCATCACC 104095 Query 131583 ----CAAACGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCG 131638 || ||||| | ||| | ||| | || || | || |||| ||||| Sbjct 104096 CCAGCAGTCGAACAGACCA-----GTCGCTTCATTAGGGCAGAAAAGACTCCACTCGCCG 104150 Query 131639 TTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTA 131698 || ||| || |||||||| |||||||| || | ||| | ||||| |||||||| | Sbjct 104151 TTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACGT 104210 Query 131699 GCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCA 131758 || | ||| |||| | | || |||||| | || || || | ||| ||| Sbjct 104211 GCACGATGAAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCA 104270 Query 131759 TGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACA 131815 ||||| || |||||||| | ||| | | || |||||||| ||| ||||||| ||| Sbjct 104271 TGCCACGGCTCCAAATAGATTGCAAACGACCCCTTGCGCTTGCCACCACCTTGATCAACG 104330 Query 131816 TGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTG 131875 | |||| | ||| ||| | || |||||||| ||| | | |||||||| | ||||| Sbjct 104331 TAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACGTGCCATTT 104390 Query 131876 GTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCG 131935 || | |||||||| | || | || ||||| | | ||| || ||||| || Sbjct 104391 GTACCACGGATGTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATGCCGATACCCCCT 104450 Query 131936 CCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTC 131985 | | || ||||| |||||||| | ||||||| || || || || Sbjct 104451 GCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTC 104500 >seq22 Length=480975 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 ||||| ||||| | || | ||||| || || || || || |||||||||||||| || Sbjct 153542 TTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCA 153601 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 |||| | || ||||||| ||||| ||||| || |||||||||| |||||||| || Sbjct 153602 CTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGA 153661 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||| || || || |||||| | |||| | | || | || ||| | | ||| Sbjct 153662 GGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCC 153721 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || | ||| || | ||||| |||| || ||||| ||||| |||||| Sbjct 153722 ACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCATA 153772 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 ||||| ||||| | || | ||||| || || || || || |||||||||||||| || Sbjct 172110 TTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCA 172051 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 |||| | || ||||||| ||||| ||||| || |||||||||| |||||||| || Sbjct 172050 CTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGA 171991 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||| || || || |||||| | |||| | | || | || ||| | | ||| Sbjct 171990 GGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCC 171931 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || | ||| || | ||||| |||| || ||||| ||||| |||||| Sbjct 171930 ACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCATA 171880 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | ||| || || ||||| || || ||||||||| Sbjct 153773 CCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTC 153832 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| | ||| || || ||| |||| | |||||||||||| || || Sbjct 153833 AACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGGA 153892 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||| || | |||| | || | || ||| | || || || Sbjct 153893 ATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACA 153952 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | ||| ||||||| || ||||||||||| ||||| Sbjct 153953 TCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 153999 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || || || || || || |||||||| ||||||||| Sbjct 154229 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 154288 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| ||||| || || || |||| | |||||||||||| || || Sbjct 154289 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 154348 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||||| | |||| | | || | | ||| | | ||| || Sbjct 154349 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 154408 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||||| || || || ||||| ||||| ||||| Sbjct 154409 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 154455 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || || || || || || |||||||| ||||||||| Sbjct 171651 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 171592 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| ||||| || || || |||| | |||||||||||| || || Sbjct 171591 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 171532 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||||| | |||| | | || | | ||| | | ||| || Sbjct 171531 ATACCTTCCTTATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACG 171472 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||||| || || || ||||| ||||| ||||| Sbjct 171471 TCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 171425 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| ||||||||||| || || || || || || ||||| |||||||||| Sbjct 153999 TGCCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGC 154058 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| |||| | || || ||||| || || || | |||||||| || ||||| || | Sbjct 154059 TCAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAG 154118 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||| | ||| | | || | | ||| | | ||| | Sbjct 154119 GGATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGA 154178 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || | || || | || ||||| | || ||||||||||| |||||| Sbjct 154179 CGTCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 154228 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| ||||||||||| || || || || || || ||||| |||||||||||| Sbjct 171879 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 171820 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || ||||| || || || | |||||||| || ||||| || || Sbjct 171819 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 171760 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||| | ||| | | || | | ||| | | ||| || Sbjct 171759 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACG 171700 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | || ||||| | || ||||||||||| |||||| Sbjct 171699 TCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCATA 171652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932949911360