Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq17 232 8e-56 seq2 136 5e-27 >seq17 Length=584494 Score = 232 bits (256), Expect = 8e-56 Identities = 1119/1748 (64%), Gaps = 66/1748 (4%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| |||||||| |||||| | ||||| ||||| | ||||| || | | |||| Sbjct 102972 TAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTTG 103031 Query 110429 GACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCC 110488 || ||| || | ||| | ||||| || |||||| ||| || || Sbjct 103032 CTCACCGTCGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGGCAGATGTAGGCACCA 103091 Query 110489 CGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGA 110548 || | || |||| ||| | || |||| ||| |||||||| ||||| || Sbjct 103092 CGATCAGCTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTTTTGTACTTT 103151 Query 110549 TTCTTGATATCATCTGGGATATCTGAG---ATATTCTGGATGGAACCCCCCGCCTTCACC 110605 | |||||| |||| || || ||| | || || | || || || | | || Sbjct 103152 TCCTTGATTGCATCAGGAATC---GAGCGCACTTTTTGCACCGAGCCACCGTCATGCAAG 103208 Query 110606 ATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665 || | | || || | ||||| ||||| | |||| || || | ||||| | Sbjct 103209 ATTTGGTTGCGCACCTCAGGTGTCCAGATACCAAGTTCGATGAGCTCCTTCATGAGGTAC 103268 Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 |||||||| || ||| ||||| ||||| | | ||| ||||| | ||| || Sbjct 103269 TTGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGGTTGTACATGTTGGACGTGAAT 103328 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 || |||| | |||||||||| |||||||| || || || || || |||||||| || ||| Sbjct 103329 GGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGCGCC 103388 Query 110786 ATCAAAAGACTGTTACGAAGACCCTTCTC-----CTTGATGCGTTCCTTG-AGAACA-TC 110838 | ||| || ||| || | ||| | | ||||| || ||| || || || || Sbjct 103389 AACAACAGGGAGTTGCGCACACCATGTTTAGCGACTTGA-GCTTTCAATGCAGCCCAATC 103447 Query 110839 CCAGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG-AAGCACCCCTTGGG 110897 |||| | || |||| | || ||||||| |||||||| ||| |||||| Sbjct 103448 CCAGAG--ACCAGATGTTGGAGTGACAC-CCCACATATCAAACTGGAAGATGCCCTTGCT 103504 Query 110898 ACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTC 110956 | | || || ||||| | |||||||| | || | | | || | ||| | || | Sbjct 103505 -CACAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGAT- 103562 Query 110957 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 111016 || |||| || | | | |||| |||||||| || | |||| || |||| Sbjct 103563 GCTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGC 103622 Query 111017 TCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 111076 || || || | | | | | |||||| |||| || | ||||| ||||| | | Sbjct 103623 TCACTTTCGAAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACCAATA 103682 Query 111077 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG---GGATAAAAATTT 111133 || | ||| | ||||| | |||||| |||| | || | ||||| | || Sbjct 103683 CCCACAGGGCGATGTCGTAGATTAGA---TCGCTTGGCTTCTGGGATCGGATAGTAGTTG 103739 Query 111134 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 111193 | |||||||| ||| |||||| |||| |||||||| |||||||| | || || | | Sbjct 103740 ATATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTTCTGA 103799 Query 111194 TAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA-AGGGCGATTGATGCCAAATT 111252 | | ||| | | | || |||| | |||||| || || || || ||||| || Sbjct 103800 AAGTTAAACACACCATTGTC------GACAAA-TTTGGACAGTGCAATGGACGCCAAGTT 103852 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTT---GGA 111309 ||| || || || ||||| ||||||||| | | || || ||||| ||| Sbjct 103853 GCACACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTGGA 103912 Query 111310 ACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG---TTGCACGCATCCTTGTA 111366 | ||| || ||||| || ||| | | || |||| ||||| ||||||||||| Sbjct 103913 GCG---AATAGTGCCCAAGTT---TTGCTGATTCGACTTGCGATTGCATGCATCCTTGTA 103966 Query 111367 GAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCG-- 111424 |||||||||||| || || || || |||| | | | ||| || ||| | || | Sbjct 103967 GAGCATGTAGGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACCACA-ATTGTT 104025 Query 111425 GCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCT 111481 ||| || | |||| ||| ||| |||| || |||||||| ||||| | ||| Sbjct 104026 GCGCCTTG----ATGGTCTTGCGGGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGCC 104081 Query 111482 TCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540 || || || |||||| | || |||| | ||||| | || | | || ||||||||| Sbjct 104082 TCGAATTCATCACCC-CAGCAGTCGAACAGACCAGTCGCTTCATTAGGGCAGAAAAGACT 104140 Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600 ||| | || | || || ||||||||||| | ||||| ||||||| || |||| Sbjct 104141 CCACTCGCCGTTGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAA 104200 Query 111601 GAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 111659 ||||| | | || ||| ||| | ||| || || | || || |||||||| | Sbjct 104201 CAGATCACGTGCA-CGATGAAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAA 104259 Query 111660 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAG 111716 | || || ||||| ||||| | ||||| ||| | || ||||| || | ||| Sbjct 104260 ATACGTCGGCATGCCACGGCTCCAAATAGATTGCAAACGACCCCTTGCGCTTGCCACCAC 104319 Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 |||||| || || || || ||| | || || || || | ||| || | |||||| | | Sbjct 104320 CTTGATCAACGTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGG 104379 Query 111777 ATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATC 111835 | |||||||| || || || || | || | || | | | || ||| || Sbjct 104380 ACGTGCCATTTGTACCACGGAT-GTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATG 104438 Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || |||||||| |||||||| ||||| || || | | | ||||| | || || || Sbjct 104439 CCGATACCCCCTGCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCC 104498 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | || || || || | |||| | | ||| || |||| || || | ||||||| Sbjct 104499 TCAATAGAATCGTCTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTA 104558 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 || || || || || |||||||| ||||| |||| | | ||||| | || || Sbjct 104559 CCTGCGTTAAACAGTGTTGGTGTGGCGTGCGTGAAGAACGAGAGCGACATGTACTCATAC 104618 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | || | || ||||| |||||||| | ||||| ||||||| ||| Sbjct 104619 GTCTCAAGCACCAGCTTGATATCTTCTTTATGGATGCCTACAGCGACACGCATGATCATT 104678 Query 112076 TACTGTGG 112083 | ||| || Sbjct 104679 TGCTGCGG 104686 >seq2 Length=1145976 Score = 136 bits (150), Expect = 5e-27 Identities = 549/845 (65%), Gaps = 36/845 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||||||||| |||||||| || | || || | ||||| Sbjct 132574 TATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATCATGTCCATC 132515 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAA---CTTGTTTGAGGAGA 122487 ||||||| || ||||| ||||| | || | || |||| | ||| || | | Sbjct 132514 CAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCATGT---AGCAAA 132458 Query 122488 CGATCCGACACATACT-CAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT 122546 ||||| | |||| | | ||||||||| ||||| | |||||||| || || | | Sbjct 132457 CGATCAG-CACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCAATCAATTC 132399 Query 122547 -ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 ||| ||||| | ||| || ||| | ||||||||| || || || | ||| Sbjct 132398 CACA-GGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCACCAATGATTT 132340 Query 122606 CGTGGATA-GT---TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG--- 122658 |||| | || | ||| || || | ||| || |||| || | || | Sbjct 132339 CGTGCACGCGTGACTCCGGAAGCTTGT---TGACG---AG-CTTGGAGTACATCAAGCAC 132287 Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | || ||||| || || |||||||| ||||| | ||||| Sbjct 132286 GCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCA 132227 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||||||||| | || | |||||| || || || |||||||| Sbjct 132226 GGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATT 132167 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCAAA 122837 ||||| ||| |||||| || |||| ||||| || ||| ||| || | || | Sbjct 132166 CCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGC-AGCGCGCGAGTCGCA 132108 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||| |||| |||||| | |||||||| | ||||| | |||| |||||| | Sbjct 132107 CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGATGGCACGTAG 132048 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 122957 || || | ||| || | || || |||||| |||||||||| || || ||| Sbjct 132047 CAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAAAGCGAGTACACTTC 131988 Query 122958 GCCATGAACCATTTCATTATGGC-AT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATC 123015 | |||| ||||| ||||| || || || |||| || ||||||| || | Sbjct 131987 GGAGTGAATGTTTTCA--ATGGCGATCTGGAATCCGTAAAAGCAGCGCGCCTCAGGCACT 131930 Query 123016 TGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 123075 || || ||| ||||| | | || || ||||| |||||| ||||| Sbjct 131929 TGCACTTCACTACTGAAATTCATCGCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGCA 131870 Query 123076 AAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTT---CCAG 123132 ||||| |||| || || ||| ||||| ||| || || ||| |||| |||| Sbjct 131869 AAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCA---TCTTGACCCAG 131813 Query 123133 TCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAATTGCTCATTTGAGCCTTT 123192 || | || || | |||||| | |||||| || |||||| ||| || |||||| Sbjct 131812 TCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCAGCCTTC 131753 Query 123193 TTATA 123197 || || Sbjct 131752 TTGTA 131748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029801888000