Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq17 232 8e-56 seq2 132 6e-26 >seq17 Length=584494 Score = 232 bits (256), Expect = 8e-56 Identities = 1050/1642 (64%), Gaps = 38/1642 (2%) Strand=Plus/Plus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || ||||| || || ||||||| || || | ||||| || | |||||| Sbjct 102971 GTAGTACATGCCGGTCTTAAGTCCTCGCTTCCACGCGTAAAAGTGCATCGATGTCAACTT 103030 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | | || || | ||| | ||||| ||| ||| |||| || || Sbjct 103031 GCTCACCGTCGGGTCGGCGATGTGCACGTTCAGCGACTGGCTTTGGCAGATGTAGGCACC 103090 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 ||||| || |||| ||| | ||| |||| ||||||||||||||| || |||| Sbjct 103091 ACGATCAGCTGCCAAATCTAACACGACCTTTTGCTTGATTTCCCACACTGTTTTGTACTT 103150 Query 118022 GTTCTTAATATCATCTGGGATATCCA-CG-ATATTTTGGATGGATCCACCCGCCTTGACC 118079 | ||| || |||| || || | | || | ||||| | || ||||| | | || | Sbjct 103151 TTCCTTGATTGCATCAGGAAT--CGAGCGCACTTTTTGCACCGAGCCACC-GTCATG--C 103205 Query 118080 ATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGA 118136 | || | || || || || ||||| ||||| | |||| |||| || ||| Sbjct 103206 AAGATTTGGTTGCGCACCTCAGGTGTCCAGATACCAAGTTCGATGAGCTCCTTCATGAGG 103265 Query 118137 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTG 118196 | ||| ||||| | ||| ||||| ||||| ||| | || || |||| |||| Sbjct 103266 TACTTGTTGACGATCGTAAATTCACCAGCGAGCACGCGACGGTTGTACATGTTGGACGTG 103325 Query 118197 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 118256 ||||||||| | | ||||| || |||||||| || || || || || || |||||||| Sbjct 103326 AATGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTCGACGCCGTTGGCATGGGC 103385 Query 118257 GCCATGAGAAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGTTCCTTGAGAGCGTCCCA 118315 |||| | ||| ||| || | ||| | ||| | | | | | || | || |||| Sbjct 103386 GCCAACAACAGGGAGTTGCGCACACCATGTTTAGCGACTT-GAGCTTTCAATGCAGCCCA 103444 Query 118316 GTCGTAGTT----GAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 118371 || || || || | | | | ||||||||||||||||| ||| || | | Sbjct 103445 ATCCCAGAGACCAGATGTTGGAGTGACACC-CCACATATCAAACTGGAAGATGCCCTTGC 103503 Query 118372 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG-AGCTC 118430 | | || || ||||| | || ||||| ||||| | ||| || | ||| || | Sbjct 103504 TCACAGGGGAGCCCTCGTAAGTTTCATACGGGCCATACTCCTTTGCAAGTTCCATAGAT- 103562 Query 118431 GCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCG 118490 || || | |||| | | |||| |||||||||||| | |||| | | || | Sbjct 103563 GCTTCCATGGCTCCATAGTACAGCGTTTCAAAAATGTGCTTGTTCAATTCTCGCGCTTGC 103622 Query 118491 TCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGG 118550 || || || | || | | |||||| |||| || | ||||| ||||| | Sbjct 103623 TCACTTTCGAAGGGGAACCCCATGAGAATAAACGCATCAGCCAACCCTTGCACACCAATA 103682 Query 118551 CCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC-ACGGGATAAAAATTCCT 118609 || | |||||||||| | |||||| | || ||| | ||||| | || | Sbjct 103683 CCCACAGGGCGATGTCGTAGATTAGATCGCTTGGCT-TCTGGGATCGGATAGTAGTTGAT 103741 Query 118610 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 118669 ||| || ||| | || |||||| |||| |||| ||| |||||||| | ||||| | | Sbjct 103742 ATCAATGACCTTGTTCAGATTTCTGGTCACAATCTTCGTGATTTCGTAGAGCTTCTGAAA 103801 Query 118670 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 118729 | ||| | | | || |||| | || | || || || ||||||| || || Sbjct 103802 GTTAAACACACCATTGTC------GACAAATTTGGACAGTGCAATGGACGCCAAGTTGCA 103855 Query 118730 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTC 118787 ||| | | || ||||| |||||||| | | || ||||||||| || | Sbjct 103856 CACCGCGACTTCGTCCTTGGATGTGTACTCGACGACCTCACAGCACAAGTTACTGGAGCG 103915 Query 118788 TTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATG 118847 ||| ||||||||||| | ||||| ||||| || || ||||||||||| |||||| Sbjct 103916 --AATAGTGCCCAAGTTTTGCTGATTCGACTTGCGATTGCATGCATCCTTGTAGAGCATG 103973 Query 118848 TATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCG--GCAGCTG 118905 || || || || || || | || | | | ||| || ||| | || | || || Sbjct 103974 TAGGGTGTGCCGGTTTCGATCTGAGCGTCCAAAATGGCGAACCACA-ATTGTTGCGCCTT 104032 Query 118906 GCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTT 118965 | | || | ||| |||| | |||||||| ||||| | ||| || || || | Sbjct 104033 G-ATGGTCTTGCGGGCCAAGCCCTGGGCTTCGTACTTGGTGTACAAGGCCTCGAATTCAT 104091 Query 118966 CACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCAC 119025 ||||| | || | || || | || | || |||||||| ||| ||| | || Sbjct 104092 CACCCCAGCAGTCGAACAGACCAGTCGCTTCATTAGGGCAGAAAAGACTCCACTCGCCGT 104151 Query 119026 CCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGAC 119085 | || || ||||||||||| | ||||||||||| | || | || ||||| || Sbjct 104152 TGGCTTCCACACGCTTCATGAACAAATCTGGGATCCACATGGCGTAAAACAGATCACGTG 104211 Query 119086 AGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGT 119145 ||| ||||| || ||||| | ||| |||| || || | | || || | Sbjct 104212 CACGATGAAGTTCATTACCGTGATTCTTCCTCAAATCCAGGAACTCAAATACGTCGGCAT 104271 Query 119146 GCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACAT 119202 ||||||| |||| || | || | |||||||| || | |||| | || | || | Sbjct 104272 GCCACGGCTCCAAATAGATTGCAAACGACCCCTTGCGCTTGCCACCACCTTGATCAACGT 104331 Query 119203 ACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTG 119262 | | |||||| | || || ||||| | ||| || | ||||| | ||| |||||||| Sbjct 104332 AACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACGTGCCATTTG 104391 Query 119263 TCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTG 119322 | || || || || | || | | | ||| ||| || || |||||||||| Sbjct 104392 TACCACGGATGTAGCTATTCGTCGCGCGAATGTTGTGCATGCTGATGCCGATACCCCCTG 104451 Query 119323 CCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCAC 119382 ||||||| ||||| ||||| | | ||||| || |||| || || || || || || Sbjct 104452 CCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAATAGAATCGT 104511 Query 119383 CCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGA 119442 | | | || | | ||| || |||| ||| |||| |||||||| ||||| || | Sbjct 104512 CTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGTGTACCTGCGTTAAACA 104571 Query 119443 GAGTTGGTGTCGCGTGGATGAA 119464 | |||||||| ||||| |||| Sbjct 104572 GTGTTGGTGTGGCGTGCGTGAA 104593 >seq2 Length=1145976 Score = 132 bits (146), Expect = 6e-26 Identities = 385/574 (67%), Gaps = 28/574 (5%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || |||||||| ||||| || ||||| || | || ||| | ||||| Sbjct 132574 TATTCACCCACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATCATGTCCATC 132515 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | ||||| |||||||| | ||| | || | || |||| | | || | |||| Sbjct 132514 CAGTCAAAAGGGTTCTTGGCGTTGTAGATCTTGGATACACCAAGCGCATGTAGCAAACGA 132455 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | | | |||||||||| | ||||| | |||||||| || || | | ||| Sbjct 132454 TCAGCACAGAATTCAATGTACTGACACATCAGCGTCGAGTTCATGCCAATCAATTCCACA 132395 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| || ||| |||||||||| || || || | | ||| |||| Sbjct 132394 -GGGAGCGAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCACCAATGATTTCGTG 132336 Query 129967 AATG---GTCTCCGTGCCAGGTCTATTG-CGCAAAGTCTTGAAG-AGTTC---CACGGCA 130018 | | | ||||| || | | ||| || || |||| || | || |||| || Sbjct 132335 CACGCGTGACTCCGGA--AGCT-TGTTGACG---AG-CTTGGAGTACATCAAGCACG-CA 132284 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || ||| | || || ||||| |||||||||||||||||| | ||||| ||| Sbjct 132283 AAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCAGGC 132224 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 ||||| || ||||||||||||||||| || | || || || || || |||||||| ||| Sbjct 132223 ATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATTCCC 132164 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGGGACTTTGTATCAAACCA 130197 || ||| ||| || || || | || |||||| ||| ||| | | | || |||| Sbjct 132163 TCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGC-GCGAGTCGCACCA 132105 Query 130198 CTTCATCGCCC-ACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC---TTCAA 130253 ||||| |||| |||| ||||| || | || |||| ||| | ||| || | | Sbjct 132104 CTTCAATGCCCAACTG-GCCTTCTTGGTCACGCATGGGATGGTTTCGATGGCACGTAGCA 132046 Query 130254 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 130287 || | |||||| || | || ||||||||||| Sbjct 132045 AGTGGTCCTTC---TCGGTCGGGTCTTTGATGTA 132015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433035476800