Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 114 2e-20 seq3 93.3 5e-14 >seq2 Length=1145976 Score = 114 bits (126), Expect = 2e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||| |||||| || | || ||||||||| ||| ||||| |||||||| || ||||||| Sbjct 132127 CCTATGCTGAACGGATTTTGGCATTTGCGGCTGTCGAGGGAATCTTCTTTTCGGGTTCCT 132186 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||| | || | ||| | |||||||| || |||||||| |||||| | ||||| || | Sbjct 132187 TCTGCTCCATCTTCTGGTTGAAGAAGCGTGGGCTCATGCCTGGTCTCAGTTTCTCGAATG 132246 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 | || ||| |||||| || || | ||| || |||||| Sbjct 132247 AACTCATCAGTCGTGATGAAGGGTTGCACTGTGACTTTGCG 132287 >seq3 Length=1043435 Score = 93.3 bits (102), Expect = 5e-14 Identities = 176/248 (71%), Gaps = 12/248 (5%) Strand=Plus/Minus Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCT-CAAGAAGATTGAT 168513 |||||||| |||||| | ||| || || || |||||| | || | ||| || | | Sbjct 493323 GCATCCTTGCCACCCTGTAAACGTGTCCCGAATTGACCAGATGGGTACAATAAAGGTAA- 493265 Query 168514 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCG-TGTCCGCGAGAGAGACTT 168572 |||||| | ||| | |||||| | ||||| |||||||||| || || || || ||| Sbjct 493264 ATTGTTGGCACCAACGTAGTCTTGCGCCATATTGACAATCGTTGAATGC-AGCGACGCTT 493206 Query 168573 CACCGTGGTGGTACGCACTCTTCTCTGCGACA-AATGCCGCCAACTGCGCCACTTTCATC 168631 | |||||||| ||||| | | ||| | ||| | |||| |||||||| || || | | Sbjct 493205 CGCCGTGGTGATACGCTGTGTGCTC-ACTACAGTACCCCGCTAACTGCGCTACCTTGACC 493147 Query 168632 TCATCCTTGAGATT---CTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTG 168688 || | | |||| || ||| | || |||||| ||| ||| || || |||||| ||| Sbjct 493146 TCTTTCGTGAGCTTGCGCTT-TAGA--CATGCGAACAAAACTTTTCGCTGCGAAACTTTG 493090 Query 168689 AGACCATC 168696 |||||||| Sbjct 493089 AGACCATC 493082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258758587200