Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq17 192 6e-44 >seq17 Length=584494 Score = 192 bits (212), Expect = 6e-44 Identities = 293/413 (71%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 79479 GTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTG 79538 |||||| ||||||||||||| |||||| || ||||| |||||||||||||| || || || Sbjct 104264 GTCGGCATGCCACGGCTCCAAATAGATTGCAAACGACCCCTTGCGCTTGCCACCACCTTG 104323 Query 79539 GTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGAC 79598 | ||||| || || |||| ||||| || || | ||| ||||| || |||| || Sbjct 104324 ATCAACGTAACGAGCAGTGTCATTGAACACACGCAACATAGGCACAATACCGTTGGACGT 104383 Query 79599 GCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGA 79657 ||| || || || ||| || |||| |||||||| | ||| | ||| |||| Sbjct 104384 GCCATTTGTACCACGGATGTAGCTATTCGTCGCGCGAATGTT-GTGCATGCTGATGCCGA 104442 Query 79658 TGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGA 79717 | ||||| | ||||||||||||| ||||| | |||||| || ||||| |||||||| | Sbjct 104443 TACCCCCTGCCCACTTGGAGATGCATGCGCATTGCTTGAGAGTGTCGTAAATGCCCTCAA 104502 Query 79718 TCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGG--GTTGTTCGTACC 79775 | || ||||| | ||| || | | ||| || |||| ||||| || || ||||| Sbjct 104503 TAGAATCGTCTTGCATGGCCAATAAGAAACACGAAGACAGTTGTGGCCGTGGT--GTACC 104560 Query 79776 GGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGT 79835 ||||| || || || || || ||||||||||||||| | ||| || ||||| Sbjct 104561 TGCGTTAAACAGTGTTGGTGTGGCGTGCGTGAAGAACGAGAGCGACATGTACTCATACGT 104620 Query 79836 CTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 ||| || || || || || |||||||| || ||||| ||||||| Sbjct 104621 CTCAAGCACCAGCTTGATATCTTCTTTATGGATGCCTACAGCGACACGCATGA 104673 Score = 179 bits (198), Expect = 4e-40 Identities = 916/1433 (64%), Gaps = 53/1433 (4%) Strand=Plus/Minus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175 ||||||| ||||| || ||||||||| || || || || || | ||||| || | Sbjct 104673 TCATGCGTGTCGCTGTAGGCATCCATAAAGAAGATATCAAGCTGGTGCTTGAGACGTATG 104614 Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235 | ||| | ||||||||||||||| || || || || || ||||| ||||| Sbjct 104613 AGTACATGTCGCTCTCGTTCTTCACGCACGCCACACCAACACTGTTTAACGCAGGTAC-- 104556 Query 19236 ACAAC--CCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGG 19293 || || || || |||| |||||| || |||| ||| | || || |||||||| Sbjct 104555 ACCACGGCCACAACTGTCTTCGTGTTTCTTATTGGCCATGCAAGACGATTCTATTGAGGG 104496 Query 19294 CATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGAT 19353 ||| ||||| || |||||| | ||||| ||||||||||||| | ||||||||||| || Sbjct 104495 CATTTACGACACTCTCAAGCAATGCGCATGCATCTCCAAGTGGGCAGGGGGTATCGGCAT 104436 Query 19354 CCAC-TGCTCGAATATCCG---GTCGAGT-GGTACACGAATCAATGGGACGAACGGAGTA 19408 | | ||| | || || || | ||| | | ||| ||| ||| || || || Sbjct 104435 CAGCATGCAC-AACATTCGCGCGACGAATAGCTAC----ATCCGTGGTACAAATGGCACG 104381 Query 19409 GCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAG 19468 || ||||||| || || ||| | || || ||||| |||| || | ||||| | || Sbjct 104380 TCCAACGGTATTGTGCCTATGTTGCGTGTGTTCAATGACACTGCTCGTTACGTTGATCAA 104321 Query 19469 GGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTC 19528 || || ||||| |||||||| ||||| || ||||| | ||||| ||||| || ||||| Sbjct 104320 GGTGGTGGCAAGCGCAAGGGGTCGTTTGCAATCTATTTGGAGCCGTGGCATGCCGACGTA 104261 Query 19529 ATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTC 19588 | || ||||| || || | ||| || ||| | || || || || || Sbjct 104260 TTTGAGTTCCTGGATTTGAGGAAGAATCACGGTAATGAACTTCATCGTGCACGTGATCTG 104201 Query 19589 TTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGG 19648 || ||| ||||||| || || | |||||| || || || ||| || ||| Sbjct 104200 TTTTACGCCATGTGGATCCCAGATTTGTTCATGAAGCGTGTGGAAGCCAACGGCGAGTGG 104141 Query 19649 CACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAAT 19708 || | ||||| | ||| |||| || |||| || || || | ||| | Sbjct 104140 AGTCTTTTCTGCCCTAATGAAGCGACTGGTCTGTTCGACTGCTGGGGTGATGAATTCGAG 104081 Query 19709 GAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGAC 19768 | |||||| | |||| |||||||||| | | ||| || ||| | | Sbjct 104080 GCCTTGTACACCAAGTACGAAGCCCAGGGCTTGGCCCGCAAGACCATCAAGGCGCAACAA 104021 Query 19769 GTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAG 19828 | ||| | | | | | ||| |||| ||||||||||| |||||| ||||||| Sbjct 104020 TTGTGGTTCGCCATTTTGGACGCTCAGATCGAAACCGGCACACCCTACATGCTCTACAAG 103961 Query 19829 GACGC-CGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCG-TCC---A 19883 || || || | || |||||| |||||| | ||| | ||| | || ||| ||| | Sbjct 103960 GATGCATGCAATCG-CAAGTCGAATCAGCAAAACTTGGGCACTAT----TCGCTCCAGTA 103906 Query 19884 ACCTGTGTACTGAAATCATGGAGGTTTCCAAGCC--GGACGAGACTGCCGTGTGTAATCT 19941 || |||| ||| || | ||| | | | || |||||| || ||||| || | Sbjct 103905 ACTTGTGCTGTGAGGTCGTCGAG--TACACATCCAAGGACGAAGTCGCGGTGTGCAACTT 103848 Query 19942 GGCGTCCCTGTGC-CTG-CCGACTT--TCGTCAA-GGCCTCCTCCTTCGACTTTGCCAAA 19996 ||||||| | ||| ||| || | || ||| ||| || | || ||||| || Sbjct 103847 GGCGTCCAT-TGCACTGTCCAAATTTGTCGACAATGGTGT----GTTTAACTTTCAGAAG 103793 Query 19997 TTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTT 20056 | ||||| | || | | || || | |||||||| ||||| ||| |||| Sbjct 103792 CTCTACGAAATCACGAAGATTGTGACCAGAAATCTGAACAAGGTCATTGATATCAACTAC 103733 Query 20057 TACCCGA-CCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGT 20115 || |||| || || | | || | || ||| | || || || || | | || || || Sbjct 103732 TATCCGATCCCAGAAGCCAAGCGA-TCTAATCTACGACATCGCCCTGTGGGTATTGGTGT 103674 Query 20116 CCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCG 20175 || || |||| || | || || | | || || | ||||| | | ||||| Sbjct 103673 GCAAGGGTTGGCTGATGCGTTTATTCTCATGGGGTTCCCCTTCGAAAGTGAGCAAGCGCG 103614 Query 20176 CGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGA 20235 || | |||||| ||| || || | ||||| | | ||| | | ||| || Sbjct 103613 AGAATTGAACAAGCACATTTTTGAAACGCTGTACTATGGAGCCATGGAAGCATCTATGGA 103554 Query 20236 ACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTAT 20295 ||| || || ||| | |||||||| || || | | |||| || || | | | |||| || Sbjct 103553 ACTTGCAAAGGAGTATGGCCCGTATGAAACTTACGAGGGCTCCCCTGTGAGCAAGGGCAT 103494 Query 20296 CCTCCAGCCGGACATGTGGGGCGTCACT-GAGAAT---GAGTTTTGGAGCGCCCTCAAGG 20351 | ||||| || |||||||| |||||| | || | | | ||| | || | Sbjct 103493 CTTCCAGTTTGATATGTGGGGTGTCACTCCAACATCTGGTCTCTGGGATTGGGCTGCA-- 103436 Query 20352 TTG--AGATCAAG-----ACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCG 20404 ||| || ||||| | || || | |||||||| || | | ||||||||||| Sbjct 103435 TTGAAAGCTCAAGTCGCTAAACATGGTGTGCGCAACTCCCTGTTGTTGGCGCCCATGCCA 103376 Query 20405 ACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAAC 20464 || || ||||| || |||||| |||| || || || | | ||||| | |||| ||||| Sbjct 103375 ACGGCGTCGACTGCTCAGATCTTGGGCAATAATGAATCCATTGAGCCATTCACGTCCAAC 103316 Query 20465 ATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCT 20517 || ||| ||||| || || ||||| || || || |||||| |||| Sbjct 103315 ATGTACAACCGTCGCGTGCTCGCTGGTGAATTTACGATCGTCAACAAGTACCT 103263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522880163200