Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq17 192 6e-44 seq2 136 4e-27 seq3 118 1e-21 seq11 102 9e-17 seq58 95.1 1e-14 >seq17 Length=584494 Score = 192 bits (212), Expect = 6e-44 Identities = 355/511 (69%), Gaps = 10/511 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | || ||||| || || || || || | ||||||||| | Sbjct 104673 TCATGCGTGTCGCTGTAGGCATCCATAAAGAAGATATCAAGCTGGTGCTTGAGACGTATG 104614 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 | | ||| | || ||| ||||||||||| ||||| ||||| ||||| ||||| Sbjct 104613 AGTACATGTCGCTCTCGTTCTTCACGCACGCCACACCAACACTGTTTAACGCAGGTAC-- 104556 Query 53313 ATCAC--CCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 | ||| || || |||| || ||| | |||| ||| | || || || || || || Sbjct 104555 ACCACGGCCACAACTGTCTTCGTGTTTCTTATTGGCCATGCAAGACGATTCTATTGAGGG 104496 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 ||| ||||| || |||||| | || || ||||||||||||| | || |||||||| || Sbjct 104495 CATTTACGACACTCTCAAGCAATGCGCATGCATCTCCAAGTGGGCAGGGGGTATCGGCAT 104436 Query 53431 CCAC-TGCTCGAACGTCCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCC 53488 | | ||| | ||| | || |||| || | | ||| || || || ||| || Sbjct 104435 CAGCATGCAC-AACATTCGCGCGA-CGAATAGCTACATCCGTGGTACAAATGGCACGTCC 104378 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || || ||||||||| | || || ||||| |||| || || ||||| | || ||| Sbjct 104377 AACGGTATTGTGCCTATGTTGCGTGTGTTCAATGACACTGCTCGTTACGTTGATCAAGGT 104318 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 ||||| ||||||||||||||||| || ||||| | ||||||||||| |||||| | | Sbjct 104317 GGTGGCAAGCGCAAGGGGTCGTTTGCAATCTATTTGGAGCCGTGGCATGCCGACGTATTT 104258 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT 53667 ||||| || || || | |||||| ||| | ||| || ||| ||||| ||||| Sbjct 104257 GAGTTCCTGGATTTGAGGAAGAATCACGGTAATGAACTTCATCG-TGCACGTGATCTGTT 104199 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 | || ||||||| || || | |||||| Sbjct 104198 TTACGCCATGTGGATCCCAGATTTGTTCATG 104168 Score = 149 bits (164), Expect = 7e-31 Identities = 305/444 (69%), Gaps = 11/444 (2%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||||||| | ||||||| |||||||| |||||||| ||||||||| ||||||| Sbjct 103405 CGCAACTCCCTGTTGTTGGCGCCCATGCCAACGGCGTCGACTGCTCAGATCTTGGGCAAT 103346 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || || | | ||||| | |||| ||||||| ||| || || || || ||||| Sbjct 103345 AATGAATCCATTGAGCCATTCACGTCCAACATGTACAACCGTCGCGTGCTCGCTGGTGAA 103286 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCA--GAAGATCAACAAGTGGAACC 55661 ||| || |||||||| ||||| | ||||| || || ||| | | |||| | Sbjct 103285 TTTACGATCGTCAACAAGTACCTCATGAAGGAGCT-CATCGAA-CTTGGTATCTGGACAC 103228 Query 55662 CGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG---GAGATTC 55718 | || | | | || ||| |||| || || || || || || ||||| Sbjct 103227 CTGAGGTGCGCAACCAAATCTTGCATGACGGTGGCTCGGTGCAAAAAGTGCGCTCGATTC 103168 Query 55719 CT-CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGAT 55776 || ||| ||||||| | ||| || |||||||| || || ||| ||| || | Sbjct 103167 CTGATGC-AATCAAGGAAAAGTACAAAACAGTGTGGGAAATCAAGCAAAAG-GTCGTGTT 103110 Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836 || || |||||||||||||| |||||| ||| |||||| |||||| | ||| Sbjct 103109 AGATTTGGCAGCTGATCGTGGTGCCTACATCTGCCAAAGCCAGTCGCTGAACGTGCACAT 103050 Query 55837 GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896 | | || | || |||||||| |||||||||||||||| ||||||| ||||| Sbjct 103049 CGCCGACCCGACGGTGAGCAAGTTGACATCGATGCACTTTTACGCGTGGAAGCGAGGACT 102990 Query 55897 CAAGACGGGTATGTACTATCTGCG 55920 ||||| || |||||||| |||| Sbjct 102989 TAAGACCGGCATGTACTACATGCG 102966 >seq2 Length=1145976 Score = 136 bits (150), Expect = 4e-27 Identities = 378/567 (67%), Gaps = 17/567 (3%) Strand=Plus/Minus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| | |||||||| | || || | ||||||||| || || |||||||| || ||| Sbjct 132274 TGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCAGGCATGAGCCCA 132215 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 |||||||||||||| ||||||| ||||||||||| |||||||| || |||||| | Sbjct 132214 CGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATTCCCTCGACAGCC 132155 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA--TCGGAAGTC-ATCCAAGTCTGAGCC 74939 ||||| || | || |||| || | | ||| || |||| ||| || ||| Sbjct 132154 GCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGCGCGAGTCGCACCACTTCAATGCC 132095 Query 74940 CATTCAGCTTTTCGTTTGAC-CGCA-GGGACAGTATCGATCGC---TTGGAAGAGGCTTG 74994 || || || || | | |||| |||| || ||||| || | | ||| || Sbjct 132094 CAACTGGCCTT--CTTGGTCACGCATGGGATGGTTTCGATGGCACGTAGCAAGTGG---T 132040 Query 74995 CCTTCTC-TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGA 75053 ||||||| ||||| || |||| | ||||||||| ||| |||||| || || ||| Sbjct 132039 CCTTCTCGGTCGGG-TCTTTGATGTATGTGTCAATCAAAAGCGAGTACACTTCGGAGTGA 131981 Query 75054 ATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATC 75112 || || || ||| |||| | |||| || | |||||||| | | || || || Sbjct 131980 ATGTTTTCAATG-GCGATCTGGAATCCGTAAAAGCAGCGCGCCTCAGGCACTTGCACTTC 131922 Query 75113 CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGC 75172 | |||||||| | | || || | || || || || ||| || || || || Sbjct 131921 ACTACTGAAATTCATCGCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGCAAAGAACGC 131862 Query 75173 CAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTC 75232 || || ||||| ||| ||| || | ||| || | ||| |||| ||||||||||| Sbjct 131861 CAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCATCTTGACCCAGTCCTTCAGGTC 131802 Query 75233 CCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGA 75292 | ||||||| | || || | ||||| |||||| | ||||| ||||||| | Sbjct 131801 ATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCAGCCTTCTTGTACATGGC 131742 Query 75293 CCACAAGTCAGGGTAATTGATTGGAAA 75319 ||||| || || | | |||||| || Sbjct 131741 CCACACTTCCGGCTCTTGGATTGGGAA 131715 >seq3 Length=1043435 Score = 118 bits (130), Expect = 1e-21 Identities = 179/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | ||||| |||||||||||||| | || || || || || Sbjct 493347 GTGAAGATGTATCGAGGACTGGCGGCATCCTTGCCACCCTGTAAACGTGTCCCGAATTGA 493288 Query 152089 CCAGAGGGCT-CGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| || | | | | | | | |||||||| || ||| | | || |||| ||| || Sbjct 493287 CCAGATGGGTACAATAAAGGTAAA-TTGTTGGCACCAACGTAGTCTTGCGCCATATTGAC 493229 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 |||||| ||||| |||||| |||||||||||||| || ||||| ||| || Sbjct 493228 AATCGTTGAATGCAGCGACGCTTCGCCGTGGTGATACGCTGTGTGCTCACTACAGTACCC 493169 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 ||| |||||||| ||||| | || |||| || || ||| ||||| ||| | | || Sbjct 493168 CGCTAACTGCGCTACCTTGACCTCTTTCGTGAGCTTGCGCTTTAGACATGCGAACAAAAC 493109 Query 152268 CTTGCGCTGGGA 152279 || ||||| || Sbjct 493108 TTTTCGCTGCGA 493097 Score = 98.7 bits (108), Expect = 1e-15 Identities = 175/251 (70%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || || |||||||||||||| | ||| || |||||||| Sbjct 493347 GTGAAGATGTATCGAGGACTGGCGGCATCCTTGCCACCCTGTAAACGTGTCCCGAATTGA 493288 Query 117365 CCACTCGGCTCCAAGA--GGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 ||| || | ||| | ||| | |||||||| || || ||| ||| |||| |||| Sbjct 493287 CCAGATGGGTACAATAAAGGTAAA--TTGTTGGCACCAACGTAGTCTTGCGCCATATTGA 493230 Query 117423 CAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAG 117481 ||||||| || || ||| || || ||||||||||| || ||||| | || ||| Sbjct 493229 CAATCGTTGAATGCAGCGACGCTTCGCCGTGGTGATACGCTGTGTGCTCACTACA-GTAC 493171 Query 117482 CCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATC 117541 ||||| | ||| || ||||| | ||| ||| || || ||| || || || | | Sbjct 493170 CCCGCTAACTGCGCTACCTTGACCTCTTTCGTGAGCTTGCGCTTTAGACATGCGAACAAA 493111 Query 117542 ACCTTGCGCTG 117552 || || ||||| Sbjct 493110 ACTTTTCGCTG 493100 >seq11 Length=740280 Score = 102 bits (112), Expect = 9e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACC-AGCAAGACGCGTACCGAATTG 117363 ||||| |||||||||| |||||||| || || ||||| | ||| | ||||||||||| Sbjct 453091 GTGAAGATGTAACGAGGACTTGCAGCGTCTTTTCCACCCATCAATCTG-GTACCGAATTG 453149 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 || | || | || | | |||||| ||| ||||| | ||| |||| ||||| Sbjct 453150 GCCGTTTGGAGAGAGAAGATGAATATTGTTGCTGCCGACAAAATCTTGCGCCATGTTGAT 453209 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 ||| || || | | ||| |||||| || ||||| || | || |||| ||||||||| Sbjct 453210 AATTGTCCCGTTCAAGCTTTGCTCACCGTGATGATAAGCAGAGTGTTCCGACACGTAGCC 453269 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGAC 117511 |||| ||||| ||||| || || ||| Sbjct 453270 AGCCAATTGAGCTACCTTGATTTCAGAC 453297 >seq58 Length=246340 Score = 95.1 bits (104), Expect = 1e-14 Identities = 355/550 (65%), Gaps = 9/550 (2%) Strand=Plus/Minus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 |||| ||||| |||| ||||| || || || |||| ||| || ||||| || || Sbjct 199559 CAATGAACTCTCGGACACTGTGGCATTCGCCCGTGGCAACCACGAAATCCTCGGGTTCGT 199500 Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCT 159058 || || |||||| ||||||| ||||||||||||| |||| |||||||| |||||| Sbjct 199499 CATGCTGCAGCATGCGCCACATACACTCGACGTAATCCCGCGCATGACCCCAATCGCGCC 199440 Query 159059 TGGCATCCATGTTCCCGAGCTCGA-TGACTTTTCCAGACTTTTTCCACTCAGCCAGAC-- 159115 | | || | ||| || | | | ||| || | || | | || || Sbjct 199439 TCGATTCAAGGTTGCCAATGTAAAGACACTCGTCAATACCCGCGTGAATGCGCACAACTG 199380 Query 159116 CGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGAC--TCATGGTTAAA 159173 || ||||||||||||| || |||||| || || | ||| ||| || |||||||| Sbjct 199379 CGCGCGTGATCTTGCGTGTGACAAACGTTGGCCCCCTGCGT--GGACTTTCGTGGTTAAA 199322 Query 159174 CAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTA 159233 |||||||| | || |||| | || | || ||||| || ||||||| Sbjct 199321 GAGAATGCCATTCACTGCAAACATGCCGTACGCTTCACGGTAGTTCACGACGCTCCAGTA 199262 Query 159234 TCCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTG 159293 |||| |||||| || ||| || || || ||||| |||||||| || ||||| Sbjct 199261 CGCAAACTGCTTGGCGATGCCATACGGTGATCGCGGATAGAATGGTGTGTTTTCGTTTTG 199202 Query 159294 AATTGGTTCCTGAACCTTTCCAAACATTTCACTCGTCCCAGCCTGATA-AAATTTGAATT 159352 || | || | || ||| | | ||||| || || || || || || | | | Sbjct 199201 CGGTGTAGCTTGCGCTTTGCCATAGAGCTCACTGGTTGACGCTTGGTAGAACTTGGTAGT 199142 Query 159353 TAGAAACAAAATTGAATTGACGAATTGCTTCAAGAATTCGAAGGGTACCCATGGCGTCGA 159412 | || | ||||| || ||||| || || || |||||||| || |||| Sbjct 199141 TTTTTCCATACCACAATTGCGGATACAATTCAATAA-GCGTAGTGTACCCATCGCATCGA 199083 Query 159413 CGTTCGCCGTGTACTCGGGCTGCTCAAAAGAGAGCTTCACGTGTGACTGGGCTCCGAGGT 159472 ||| || ||||| |||| | || || |||| ||| ||||| ||| ||||| | | Sbjct 199082 CGTCGGCTGTGTATTCGGACATTTCGAACGAGACCTTGACGTGCGACATCGCTCCCAAAT 199023 Query 159473 TATAGACCTC 159482 | || ||||| Sbjct 199022 TGTAAACCTC 199013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214084744000