Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq58 170 2e-37 >seq58 Length=246340 Score = 170 bits (188), Expect = 2e-37 Identities = 397/594 (67%), Gaps = 10/594 (2%) Strand=Plus/Plus Query 29871 TCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACT 29930 |||| ||||| ||||||| |||| ||||| || ||||| || | | ||||| || | Sbjct 5808 TCTTGAGCGGCTCCACGTGGTCCAAGTAGATATGTGCGTCACCAATGACGTGGATGAAAT 5867 Query 29931 CTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGA 29990 | || | | || || ||||| || || ||| ||||| | | ||||||||||| Sbjct 5868 CACCAGCCTTCAGTCCCGTGACCTGTGCGATCGACCGTGTGAGCAAGGCGTAGCTGGCGA 5927 Query 29991 TGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 30050 | || || || || || ||||||||||| |||| | |||||| | ||| || || | Sbjct 5928 TATTGAATGGGACGCCCAGCCCCATGTCTGCCGAGCGCTGGTACATCTGGCAGCTAAGTT 5987 Query 30051 CTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCA 30110 | || | || || || ||||| | |||||| ||||| || ||||| || Sbjct 5988 CACCATTAGCGACATAGAATTGACAAAACATGTGGCATGGAGGGAGTGCCATCTCCTTCA 6047 Query 30111 AGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGTTCCTGA-- 30167 | || || |||||||| ||| ||||||||| | ||| ||| | ||||| ||| Sbjct 6048 AATCCGCTGGATTCCAGGCTGACATGATGATGCGACGGTCGTTCGGATTTGTT-TTGAGC 6106 Query 30168 -TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT 30225 || | |||| || || |||||||| || ||| || | ||| || || ||| Sbjct 6107 TTGTGAATCACGTCG----GCGAGCTGATCGACACCCTGGCCAGTGTAATCGGCGTGCAT 6162 Query 30226 GTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30285 | ||||||| || |||||||| | |||||| ||||| || || ||||| ||||| || Sbjct 6163 ATTGGTGTACTTGGCGCCGAAATGTCGCCACTGAAACCCATATACGGGTCCAAGGTCACC 6222 Query 30286 CTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 30345 ||| | || |||| || | ||||||| | ||||| || || ||| ||||||| Sbjct 6223 AGTTTCACGGTTTTCGAGTCCAATGCTGTCCAAGTATTCTCTCGAGCCATTGCCGTCCCA 6282 Query 30346 GATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30405 ||| | ||| || ||| |||| || ||| || |||| ||||||||| Sbjct 6283 GATACGAATGTTCTTGTCCTGGAGTGTCTTGGCATTCGTGTCGCCACTGATGAACCACAG 6342 Query 30406 CAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 | ||| || | || | |||||| || | ||| ||||| | ||| ||||| Sbjct 6343 TAACTCTTCTGCAACTCCACGCCAAAACACTCGCTTCGTCGTTAAGAGCGGAAA 6396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309013465760