Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq22 109 3e-19 seq27 93.3 3e-14 >seq22 Length=480975 Score = 109 bits (120), Expect = 3e-19 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTC 34546 ||||| | |||||| ||||| || ||||||||| |||||||| || | || ||| | Sbjct 153782 AGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTG--C 153839 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | ||||| | || || || || || || ||||||||||| || || || | || | Sbjct 153840 GACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGGAATACCTT 153899 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGG 34666 |||| ||| ||| ||||| || | ||| | ||| | |||||| |||| | Sbjct 153900 CCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAG 153959 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||||||| || || ||||| |||||||| ||||||||| Sbjct 153960 TAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 154000 Score = 89.7 bits (98), Expect = 3e-13 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT- 34534 || ||| || | |||||| | |||||| || | || ||||||||||| || |||| Sbjct 153541 GTTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATC 153600 Query 34535 -CTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCC 34593 || ||| || || ||||||| || || ||||| ||||| || | ||| ||||| || Sbjct 153601 ACTCAAA--GTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCT 153658 Query 34594 GGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT 34652 || || | || |||||||| |||||| || || ||| | ||| | ||| Sbjct 153659 GGAGGAATACCTTCCTTGTCCTGGATCTTCTG-CTTCACGTTGTCAATAGAGTCCGAAGG 153717 Query 34653 CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| |||| || || || || || || ||||| ||||| || |||||||| Sbjct 153718 TTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 153771 Score = 89.7 bits (98), Expect = 3e-13 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT- 34534 || ||| || | |||||| | |||||| || | || ||||||||||| || |||| Sbjct 172111 GTTGCCACCGCGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATC 172052 Query 34535 -CTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCC 34593 || ||| || || ||||||| || || ||||| ||||| || | ||| ||||| || Sbjct 172051 ACTCAAA--GTACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCT 171994 Query 34594 GGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT 34652 || || | || |||||||| |||||| || || ||| | ||| | ||| Sbjct 171993 GGAGGAATACCTTCCTTGTCCTGGATCTTCTG-CTTCACGTTGTCAATAGAGTCCGAAGG 171935 Query 34653 CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| |||| || || || || || || ||||| ||||| || |||||||| Sbjct 171934 TTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 171881 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTC 34546 |||||||| ||||| || | || |||||| |||||||| || || | || ||| | Sbjct 154010 AGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTG--C 154067 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | || ||||| || || || ||||| || | ||| || || || || || | || | Sbjct 154068 GACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTT 154127 Query 34607 CCTTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTC-TTCGCTCTCCACTTCCAC 34664 |||||||| ||||||||||| | | || || | ||| || | || || |||| Sbjct 154128 CCTTGTCTTGAATCTTTTGTTTGACATTAT-CGATCGAGTCGGACGGT-TCGACGTCCAA 154185 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || ||||| || |||||||| |||||||| Sbjct 154186 TGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 154227 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTC 34546 |||||||| ||||| || | || |||||| |||||||| || || | || ||| | Sbjct 171870 AGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTG--C 171813 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | | || ||||| || || || ||||| || | ||| || || || || || | || | Sbjct 171812 GACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTT 171753 Query 34607 CCTTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTC-TTCGCTCTCCACTTCCAC 34664 |||||||| ||||||||||| | | || || | ||| || | || || |||| Sbjct 171752 CCTTGTCTTGAATCTTTTGTTTGACATTAT-CGATCGAGTCGGACGGT-TCGACGTCCAA 171695 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || ||||| || |||||||| |||||||| Sbjct 171694 TGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 171653 >seq27 Length=441917 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| ||||| ||||||||||| || ||||| || || || || || || Sbjct 63548 AGACGCAACACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGG 63607 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCC 34604 ||||||| | ||| || || ||||| || | |||||| || || || || | ||| Sbjct 63608 CCGTCTTCCAATTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGAGGAATTCC 63663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728525985240