Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq22 161 9e-35 seq78 127 2e-24 >seq22 Length=480975 Score = 161 bits (178), Expect = 9e-35 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || | || || ||| | || || | || || ||||||||| Sbjct 154227 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCC 154168 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||||||||| ||||||||||| |||||||| || || ||||| Sbjct 154167 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 154108 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC-CGATTACAA 27166 || ||| | || | || || || || | || || || || |||| ||| ||||| Sbjct 154107 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGT-CGCACGTTGAGCGACTACAA 154049 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||||||||| || || ||||| |||||| |||| |||||||| Sbjct 154048 CATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGGCAT 153998 Score = 158 bits (174), Expect = 1e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || | || || ||| | || || | || || ||||||||| Sbjct 171653 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCC 171712 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||||||||| ||||||||||| |||||||| || || ||||| Sbjct 171713 GACTCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAG 171772 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||| | || | || || || || | || || | ||| |||| ||| ||||| Sbjct 171773 CAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGA-TGGTCGCACGTTGAGCGACTACAA 171831 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||||||||| || || ||||| |||||| |||| ||||| || Sbjct 171832 CATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGGTAT 171882 Score = 154 bits (170), Expect = 1e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||| || || | |||||| | || ||||| || || Sbjct 154000 CATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTC 153941 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| ||||| | || || |||||||| ||||| || ||||| || || || ||||| Sbjct 153940 GGACTCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCTGATCA 153881 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC-CGATTACA 27165 ||||||||| || | ||| || || || |||||||| || || |||| ||| || | Sbjct 153880 ACAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGT-CGCACGTTGAGCGACTATA 153822 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| |||||||||||||| | || ||||| | ||| |||| ||||| || Sbjct 153821 ACATCCAAAAGGAGTCGACGCTCCACTTGGTGCTTCGTCTGCGTGGTGGTAT 153770 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || | || || ||||||||| Sbjct 154455 ATGCAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCGTCC 154396 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || || ||||| || || ||||| || || || |||||| Sbjct 154395 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAA 154336 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || || || |||||||| || || | ||| || || Sbjct 154335 CAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTATAAT 154276 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| ||||| || || ||||| | ||| |||| ||||| || Sbjct 154275 ATTCAGAAGGAATCGACATTGCACTTGGTGCTTCGTCTGCGAGGTGGTAT 154226 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || | || || ||||||||| Sbjct 171425 ATGCAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCGTCC 171484 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || || ||||| || || ||||| || || || |||||| Sbjct 171485 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAA 171544 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || || || |||||||| || || | ||| || || Sbjct 171545 CAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTATAAT 171604 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| ||||| || || ||||| | ||| |||| ||||| || Sbjct 171605 ATTCAGAAGGAATCGACATTGCACTTGGTGCTTCGTCTGCGAGGTGGTAT 171654 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || ||| | || |||||||| || Sbjct 153771 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 153712 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || || || || || || ||||| ||||| || || || |||||| Sbjct 153711 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 153652 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || || |||||||| || || | |||||||| Sbjct 153651 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 153592 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||||||||||| ||||| || || ||||| | ||| | || ||||||| Sbjct 153591 ATTCAAAAGGAATCGACATTGCACTTGGTGCTTCGTCTTCGCGGTGGCA 153543 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || ||| | || |||||||| || Sbjct 171881 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 171940 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || || || || || || ||||| ||||| || || || |||||| Sbjct 171941 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 172000 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || || |||||||| || || | |||||||| Sbjct 172001 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 172060 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||||||||||| ||||| || || ||||| | ||| | || ||||||| Sbjct 172061 ATTCAAAAGGAATCGACATTGCACTTGGTGCTTCGTCTTCGCGGTGGCA 172109 >seq78 Length=145407 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||| || |||||| | || || || || |||||||| || Sbjct 113210 ATGCAGATCTTCGTCAAAACTCTTACGGGCAAGACCATCACGCTGGACGTGGAACCTTCG 113151 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||| | ||||| ||||| || || ||||| ||||| || || || ||||| Sbjct 113150 GACAGCATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 113091 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || ||||| ||||||||||| | || |||| || |||||| Sbjct 113090 CAACGTCTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACGCTTTCGGACTACAAC 113031 Query 27168 ATTCAAAAGG 27177 || ||||||| Sbjct 113030 ATCCAAAAGG 113021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916877785600