Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq22 98.7 7e-16 seq27 87.8 1e-12 >seq22 Length=480975 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| || | || ||||| || ||| | || |||||| || Sbjct 154227 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCC 154168 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| ||||||||||| || ||||| ||||| | || || | Sbjct 154167 GACTCGATCGATAAT--GTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATC 154110 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || ||||| ||||| || | || || | |||| ||| ||| |||| Sbjct 154109 AGCAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACA 154050 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| || || ||| || ||||| ||||| |||||| ||||||| ||| Sbjct 154049 ACATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGGC 154000 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| || | || ||||| || ||| | || |||||| || Sbjct 171653 ATGCAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCC 171712 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| ||||||||||| || ||||| ||||| | || || | Sbjct 171713 GACTCGATCGATAAT--GTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATC 171770 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || ||||| ||||| || | || || | |||| ||| ||| |||| Sbjct 171771 AGCAACGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACA 171830 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| || ||||| ||||| |||||| ||||||| || Sbjct 171831 ACATTCAGAAGGAGTCGACATTGCACTTGGTATTGCGTCTGCGTGGTGG 171879 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| || | || |||||| ||||| | ||||| || | | Sbjct 153999 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCG 153940 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || || |||||||| || || |||||| |||| || | Sbjct 153939 GACTCTATTGACAAT--GTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCTGATC 153882 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || || ||||| || ||||| || ||||| || | |||| ||| ||| || | Sbjct 153881 AACAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATA 153822 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||| | ||| ||||||| || Sbjct 153821 ACATCCAAAAGGAGTCGACGCTCCACTTGGTGCTTCGTCTGCGTGGTGG 153773 >seq27 Length=441917 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || ||||| || || |||||||| |||| |||| |||| || Sbjct 63651 GATCAGCAGCGTCTGATCTTTGCTGGCAAGCAATTGGAAGACGGCCGCACGCTGTCGGAC 63592 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || |||||||| | || ||||| |||||| ||||||| || Sbjct 63591 TACAACATCCAGAAGGAGAGCACGCTCCACTTGGTGTTGCGTCTGCGTGGTGG 63539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861185619560