Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq78 172 1e-37 seq22 143 6e-29 seq113 96.9 8e-15 seq27 87.8 4e-12 >seq78 Length=145407 Score = 172 bits (190), Expect = 1e-37 Identities = 154/193 (80%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||| || |||| ||| || | |||||||||| |||||||| || ||||| Sbjct 113023 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 113082 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || ||||| || || ||||||| |||||||||||||||||||||||| || ||||| || Sbjct 113083 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 113142 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || ||| || || || ||||| ||||| ||||| ||||| || || || Sbjct 113143 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 113202 Query 211107 ACCTGCATTTTAT 211119 | |||||| |||| Sbjct 113203 ATCTGCATCTTAT 113215 >seq22 Length=480975 Score = 143 bits (158), Expect = 6e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || | ||| || || ||||| |||||||||||||| || | ||| || | ||||| Sbjct 153788 AGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAA-CGTGCGACCATC 153846 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||| |||||| || ||||| || | || ||||| |||||||||| |||||||| || Sbjct 153847 TTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATC 153906 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||| ||||| ||||| || || || | ||| ||| || || || | ||| ||||| Sbjct 153907 TTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGT 153966 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| ||||| | |||||| Sbjct 153967 TTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 153999 Score = 136 bits (150), Expect = 9e-27 Identities = 165/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952 ||||| | || || | ||| | || || || ||||| || || ||||| | ||| | | Sbjct 153551 CGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAG-T 153609 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || |||||||||||||| || || || || || |||||||| || ||||||| || Sbjct 153610 ACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACC 153669 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || |||||||| || || | ||| || ||| || || | Sbjct 153670 TTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAA 153729 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || | ||||| || || | |||||| Sbjct 153730 AGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 153771 Score = 136 bits (150), Expect = 9e-27 Identities = 165/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952 ||||| | || || | ||| | || || || ||||| || || ||||| | ||| | | Sbjct 172101 CGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAG-T 172043 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || |||||||||||||| || || || || || |||||||| || ||||||| || Sbjct 172042 ACGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACC 171983 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || |||||||| || || | ||| || ||| || || | Sbjct 171982 TTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAA 171923 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || | ||||| || || | |||||| Sbjct 171922 AGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 171881 Score = 131 bits (144), Expect = 4e-25 Identities = 164/221 (74%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 || || || || || || ||||| || | ||| | | | || |||||||||||||| || Sbjct 154259 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAG-TACGACCGTCTTCCAGCTGCTTTCC 154317 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || || || | || ||||| |||||||||| |||||||| ||||| ||||| || || Sbjct 154318 AGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTT 154377 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 |||||| ||||| | ||| || ||| || || | ||||| ||||| || ||||| || Sbjct 154378 CACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGT 154437 Query 211097 CTTTACAAACACCTGCATTTTATGGTTACTTGATGCTTCTT 211137 ||| || || | ||||||| | | ||| ||| | |||||| Sbjct 154438 CTTCACGAAGATCTGCATTGTCTTCTTA-TTGCTTCTTCTT 154477 Score = 131 bits (144), Expect = 4e-25 Identities = 164/221 (74%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 || || || || || || ||||| || | ||| | | | || |||||||||||||| || Sbjct 171621 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAG-TACGACCGTCTTCCAGCTGCTTTCC 171563 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || || || | || ||||| |||||||||| |||||||| ||||| ||||| || || Sbjct 171562 AGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTT 171503 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 |||||| ||||| | ||| || ||| || || | ||||| ||||| || ||||| || Sbjct 171502 CACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGT 171443 Query 211097 CTTTACAAACACCTGCATTTTATGGTTACTTGATGCTTCTT 211137 ||| || || | ||||||| | | ||| ||| | |||||| Sbjct 171442 CTTCACGAAGATCTGCATTGTCTTCTTA-TTGCTTCTTCTT 171403 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 || ||||| || || ||||| || || | ||| | | | ||||| || |||||||| || Sbjct 154031 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACG-TGCGACCATCCTCAAGCTGCTTTCC 154089 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || ||||| || ||||| || || ||||| | ||||||||||| || ||||||||||| Sbjct 154090 AGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTT 154149 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || || ||||| | ||| || ||| || || | ||||| ||||| ||||| | || Sbjct 154150 GACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGTCTTCCCCGTTAATGT 154209 Query 211097 CTTTACAAACACCTGCAT 211114 ||| ||||| | |||||| Sbjct 154210 CTTCACAAAGATCTGCAT 154227 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 || ||||| || || ||||| || || | ||| | | | ||||| || |||||||| || Sbjct 171849 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACG-TGCGACCATCCTCAAGCTGCTTTCC 171791 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || ||||| || ||||| || || ||||| | ||||||||||| || ||||||||||| Sbjct 171790 AGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTT 171731 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || || ||||| | ||| || ||| || || | ||||| ||||| ||||| | || Sbjct 171730 GACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGTCTTCCCCGTTAATGT 171671 Query 211097 CTTTACAAACACCTGCAT 211114 ||| ||||| | |||||| Sbjct 171670 CTTCACAAAGATCTGCAT 171653 >seq113 Length=36633 Score = 96.9 bits (106), Expect = 8e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| ||||||||||| || ||||| || || || || || || |||| ||||||| Sbjct 6074 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCC 6133 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| || || || || ||||| || || | ||| || || || ||||| ||| Sbjct 6134 TTGTCCTGAATTTTCTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCGACGTCGAGCGTG 6193 Query 211077 ATCGTCTTTCC 211087 || || || || Sbjct 6194 ATGGTTTTACC 6204 >seq27 Length=441917 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 || ||||||||||||||||||||||| || || || || ||| |||| || || || Sbjct 63745 ACACCTTCCTTGTCCTGGATCTTTTGCTTGACATTGTCAATGCTGTCCGATGGCTCCACA 63804 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTT 211123 || | ||||| ||||| |||||||| || || || || | ||||||||| || || Sbjct 63805 TCCAATGTGATGGTCTTGCCCGTGAGGGTTTTCACGAAAATCTGCATTTTCTGTTT 63860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147841542200