Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq22 116 3e-21 >seq22 Length=480975 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || || |||||| | || || || | || Sbjct 153771 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 153712 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || |||| | | || || || || ||||| |||||| | || ||||||||| Sbjct 153711 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 153652 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || || || |||||||||| || ||||| | |||||||| Sbjct 153651 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 153592 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| || || ||||| || || || Sbjct 153591 ATTCAAAAGGAATCGACATTGCACTTGGT 153563 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | ||||| |||||||| ||| | || || || || || Sbjct 153999 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAAACGATTACTTTGGATGTGGAGCCCTCG 153940 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || |||| | | || |||||||| || || |||||| | || || |||||| Sbjct 153939 GACTCTATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCTGATCAA 153880 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || || || || || ||||||| | ||||| || |||| || ||| Sbjct 153879 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACGTTGAGCGACTATAAC 153820 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 153819 ATCCAAAAGGAGTCGAC 153803 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || || |||||| | || || || | || Sbjct 171881 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTTTGGATGTGGAACCTTCG 171940 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || |||| | | || || || || ||||| |||||| | || ||||||||| Sbjct 171941 GACTCTATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 172000 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || || || |||||||||| || ||||| | |||||||| Sbjct 172001 CAACGTCTCATTTTTGCGGGTAAGCAGCTGGAAGACGGTCGTACTTTGAGTGATTACAAT 172060 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| || || ||||| || || || Sbjct 172061 ATTCAAAAGGAATCGACATTGCACTTGGT 172089 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || ||||| || || || ||||| | || || || | | Sbjct 154456 AATGCAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCGTC 154397 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | | || | | || || || ||| || || |||||| | || || ||||| Sbjct 154396 CGACTCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCA 154337 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| || || || |||||||||| || ||||| |||| || || Sbjct 154336 ACAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTATAA 154277 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || ||||| || || || | | ||||||| || Sbjct 154276 TATTCAGAAGGAATCGACATTGCACTTGGTGCTTCGTCTGCGAGGTGG 154229 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || ||||| || || || ||||| | || || || | | Sbjct 171424 AATGCAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCGTC 171483 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | | || | | || || || ||| || || |||||| | || || ||||| Sbjct 171484 CGACTCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCA 171543 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| || || || |||||||||| || ||||| |||| || || Sbjct 171544 ACAGCGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTATAA 171603 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || ||||| || || || | | ||||||| || Sbjct 171604 TATTCAGAAGGAATCGACATTGCACTTGGTGCTTCGTCTGCGAGGTGG 171651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008446542240