Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq22 156 1e-32 seq78 145 2e-29 seq27 93.3 1e-13 seq113 87.8 4e-12 >seq22 Length=480975 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| | || ||||| ||||| | ||||||||| |||||| Sbjct 153551 CGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTA 153610 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| |||||||| || || || || || |||||||| || || ||||||||| Sbjct 153611 CGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCT 153670 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||||| || || | ||| || | |||||| || || Sbjct 153671 TCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAA 153730 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| ||||| || || | ||| | ||||| Sbjct 153731 GTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 153771 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| | || ||||| ||||| | ||||||||| |||||| Sbjct 172101 CGAAGACGAAGCACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAATCACTCAAAGTA 172042 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| |||||||| || || || || || |||||||| || || ||||||||| Sbjct 172041 CGACCGTCTTCCAGCTGCTTACCCGCAAAAATGAGACGTTGTTGATCTGGAGGAATACCT 171982 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||||| || || | ||| || | |||||| || || Sbjct 171981 TCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGAGTCCGAAGGTTCCACATCCAAA 171922 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| ||||| || || | ||| | ||||| Sbjct 171921 GTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 171881 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || || || ||||||| || || ||| ||| || | |||||| Sbjct 153788 AGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCT 153847 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| |||||||| || | || ||||| || || |||||||||||||| ||| Sbjct 153848 TCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCT 153907 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| |||||||||||| || || | ||| |||| ||||| || || || ||||| Sbjct 153908 TGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTT 153967 Query 225682 TTGCCCGTCAAAGTTTT 225698 || |||||||| || || Sbjct 153968 TTCCCCGTCAACGTCTT 153984 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| || || | ||| || ||| |||||| | || ||||| |||||||| ||| Sbjct 154259 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCA 154318 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || | || ||||| || || |||||||||||||| || || ||||| |||||| Sbjct 154319 GCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTC 154378 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||| | ||| || | ||| ||||| |||||||| |||||||| || | || Sbjct 154379 ACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTC 154438 Query 225697 TTTATGAACACTTGCATT 225714 || | ||| | |||||| Sbjct 154439 TTCACGAAGATCTGCATT 154456 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| || || | ||| || ||| |||||| | || ||||| |||||||| ||| Sbjct 171621 GTCGATTCCTTCTGAATATTATAGTCGCTCAAAGTACGACCGTCTTCCAGCTGCTTTCCA 171562 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || | || ||||| || || |||||||||||||| || || ||||| |||||| Sbjct 171561 GCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCTGCTTC 171502 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||| | ||| || | ||| ||||| |||||||| |||||||| || | || Sbjct 171501 ACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGATGGTCTTGCCGGTGAGTGTC 171442 Query 225697 TTTATGAACACTTGCATT 225714 || | ||| | |||||| Sbjct 171441 TTCACGAAGATCTGCATT 171424 Score = 125 bits (138), Expect = 2e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || || | ||||| ||| ||| || | ||||| || |||||||| ||| Sbjct 154031 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCA 154090 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| || ||||| || || || || || |||||||||||||| |||||||| || Sbjct 154091 GCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTG 154150 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||||| | ||| || | ||| ||||| || ||||| ||||| ||||| || || Sbjct 154151 ACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGTCTTCCCCGTTAATGTC 154210 Query 225697 TT 225698 || Sbjct 154211 TT 154212 Score = 125 bits (138), Expect = 2e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || || | ||||| ||| ||| || | ||||| || |||||||| ||| Sbjct 171849 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTTCCA 171790 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| || ||||| || || || || || |||||||||||||| |||||||| || Sbjct 171789 GCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTTTG 171730 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||||| | ||| || | ||| ||||| || ||||| ||||| ||||| || || Sbjct 171729 ACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGTCTTCCCCGTTAATGTC 171670 Query 225697 TT 225698 || Sbjct 171669 TT 171668 >seq78 Length=145407 Score = 145 bits (160), Expect = 2e-29 Identities = 148/193 (77%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| || | | || | |||||||| | ||||| ||||| ||||| Sbjct 113023 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 113082 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || ||||| || || || ||||| ||||||||||| |||||||||||||| || || Sbjct 113083 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 113142 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 ||| |||| || | ||||||||| | |||||| ||||||||||| | |||||| | ||| Sbjct 113143 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 113202 Query 225706 ACTTGCATTTTAT 225718 | ||||| |||| Sbjct 113203 ATCTGCATCTTAT 113215 >seq27 Length=441917 Score = 93.3 bits (102), Expect = 1e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 225609 ACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 |||||||||||| |||||||||||||| ||| || ||| |||| || | ||||| || Sbjct 63747 ACCTTCCTTGTCCTGGATCTTTTGCTTGACATTGTCAATGCTGTCCGATGGCTCCACATC 63806 Query 225669 TAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGTT 225722 || ||||| ||||||||||| | ||||| | ||| | |||||||| || || Sbjct 63807 CAATGTGATGGTCTTGCCCGTGAGGGTTTTCACGAAAATCTGCATTTTCTGTTT 63860 >seq113 Length=36633 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||||||| ||||| ||||| || || || || || || ||||| |||||| Sbjct 6074 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATTCCTTCC 6133 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || || || ||||| || || || | ||| || | || ||||| | |||| Sbjct 6134 TTGTCCTGAATTTTCTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCGACGTCGAGCGTG 6193 Query 225676 ATCGTCTTGCC 225686 || || || || Sbjct 6194 ATGGTTTTACC 6204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526921794320