Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq58 122 7e-23 >seq58 Length=246340 Score = 122 bits (134), Expect = 7e-23 Identities = 390/603 (65%), Gaps = 20/603 (3%) Strand=Plus/Plus Query 29639 TGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACA 29698 || ||| | ||||| ||||||||||| | ||||| || || || || | | ||||| Sbjct 5804 TGGATCTTGAGCGGCTCCACGTGGTCCAAGTAGATATGTGCGTCACCAATGACGTGGATG 5863 Query 29699 AACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTG 29758 || || || | | || || ||||| || || ||| ||||| | | ||||||| Sbjct 5864 AAATCACCAGCCTTCAGTCCCGTGACCTGTGCGATCGACCGTGTGAGCAAGGCGTAGCTG 5923 Query 29759 GCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAG 29818 ||||| || || || || || ||||||||||| | || | |||||| | |||||| Sbjct 5924 GCGATATTGAATGGGACGCCCAGCCCCATGTCTGCCGAGCGCTGGTACATCTGGCAGCTA 5983 Query 29819 AGCTCTCCGTCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATG 29875 || || || | || || || |||| ||||| ||||| ||||| || ||||| Sbjct 5984 AGTTCACCATTAGCGACATAGAATTGACAAAACATG---TGGCATGGAGGGAGTGCCATC 6040 Query 29876 AGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTC-TTCTGGGTTGTT 29934 ||| || || |||||||| ||| ||||||||| | ||| ||| | ||||| Sbjct 6041 TCCTTCAAATCCGCTGGATTCCAGGCTGACATGATGATGCGACGGTCGTTCGGATTTGTT 6100 Query 29935 CCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990 ||| || | |||| || || |||||||| || ||| || | ||| || | Sbjct 6101 -TTGAGCTTGTGAATCACGTCG----GCGAGCTGATCGACACCCTGGCCAGTGTAATCGG 6155 Query 29991 NNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCA 30050 ||||||| | |||||| ||||| || || ||||| | Sbjct 6156 CGTGCATATTGGTGTACTTGGCGCCGAAATGTCGCCACTGAAACCCATATACGGGTCCAA 6215 Query 30051 GGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30110 |||| || ||| | || |||| || | ||||||| | ||||| || || ||| Sbjct 6216 GGTCACCAGTTTCACGGTTTTCGAGTCCAATGCTGTCCAAGTATTCTCTCGAGCCATTGC 6275 Query 30111 CGTCCCAGATCTTTACCCCCTTCTC--GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGAC 30168 |||||||||| | ||| || |||| | || |||| || ||| || |||| Sbjct 6276 CGTCCCAGATACGAATGTTCTTGTCCTGGAGTG-TC-TTGGCATTCGTGTCGCCACTGAT 6333 Query 30169 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228 ||||||||| | ||| || | || | |||||| || | ||| ||||| | ||| || Sbjct 6334 GAACCACAGTAACTCTTCTGCAACTCCACGCCAAAACACTCGCTTCGTCGTTAAGAGCGG 6393 Query 30229 AAA 30231 ||| Sbjct 6394 AAA 6396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406161813968080