Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 >seq2 Length=1145976 Score = 105 bits (116), Expect = 6e-18 Identities = 534/834 (64%), Gaps = 14/834 (2%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||| || |||||||| || ||||| | | || || | ||||| | ||||| Sbjct 132565 ACACGCTTCTCAAAGAAATTGGTCTTGCCCTGCAGTGAGATCATGTCCATCCAGTCAAAA 132506 Query 4332 GGATTAGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTAC 4390 || || | |||||||| || || |||| || || ||||| || ||||| || Sbjct 132505 GGGTTCTTGGCGTTGTAGATCTTGGATACACCA-AGCGCATGTAGCAAACGATCAGC-AC 132448 Query 4391 A-AATTCTATATACTGGCTCATGAGT-TCGCAGTTAATTCCAATTAATCTCACAGGTAGC 4448 | ||||| || ||||| | ||| || ||| |||| || ||||| ||| |||||| ||| Sbjct 132447 AGAATTCAATGTACTGACACATCAGCGTCG-AGTTCATGCCAATCAATTCCACAGGGAGC 132389 Query 4449 GCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTT-T 4507 | | | | || || | || || || ||||| || || || || | | | Sbjct 132388 GAATCCTTGACGAATTCCTTCTCAATCGTGACGGCGTCACCAATGATTTCGTGCACGCGT 132329 Query 4508 ATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAA 4567 || || | || || || | | ||| || |||||||| ||||| ||||| Sbjct 132328 GACTCCGGAAGCTTG-TTGACGAGCTTGGAGTACATCAAGCACGCAAAGTCACAGTGCAA 132270 Query 4568 ACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTT 4627 ||||| || | || || ||||| || || || | | || ||||| | || | ||| Sbjct 132269 CCCTTCATCACGACTGATGAGTTCATTCGAGAAACTGAGACCAGGCATGAGCCCACGCTT 132210 Query 4628 TTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687 || | ||| || || | | || || || |||||||| || || || || || ||||| Sbjct 132209 CTTCAACCAGAAGATGGAGCAGAAGGAACCCGAAAAGAAGATTCCCTCGACAGCCGCAAA 132150 Query 4688 CGCTACTAATCGGGACCCGAACG--AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAG 4745 || | |||| | | | | ||| | | | | ||| || |||||||| Sbjct 132149 TGCCAA-AATCCGTTCAGCATAGGCAGCAGCGCGCGAGTCGCA-CCACTTCAATGCCCAA 132092 Query 4746 TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCA 4805 | || || || | ||||| || || || | || || | || | || || Sbjct 132091 CTGGCCTTCTTGGTCACGCATGGGATGGTTTCGATGGCACGTAGCAAGTGGTCCTTCTCG 132032 Query 4806 AATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCT 4865 ||||||| || || ||||| || | || |||| ||| || || || ||||| Sbjct 132031 GTCGGGTCTTTGATGTATGTGTCAATCAAAAGCGAGTACACTTCGGAGTGAATGTTTTCA 131972 Query 4866 ATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTAC-AAAA 4924 || || ||||| |||||||||||||| | || || | ||||| ||||| ||| ||| Sbjct 131971 ATGGCGATCTGGAATCCGTAAAAGCAGCGCGCCTCAGGCACTTGCACTTCACTACTGAAA 131912 Query 4925 TCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 | || | | ||||||||| || || || || ||||| ||||| |||||||| || || Sbjct 131911 TTCATC-GCAAGGTTTTCGTTCACAATCCCATCGCTGGCAGCAAAGAACGCCAAGACGTG 131853 Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044 || ||| | |||||| | | || ||||| || || | || Sbjct 131852 CTTGATGAAGAAGCGTTCGTTGTCGGTCATCTTGACCCAGTCCTTCAGGTCATGCACCAA 131793 Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCA 5098 ||| | ||||||| | |||||||| |||||| || || |||||||| | ||| Sbjct 131792 ATCCAGTTCTTCAGCGGTCCAAAAACTCGCTTCAGCCTTCTTGTACATGGCCCA 131739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048142693240