Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq58 172 4e-38 >seq58 Length=246340 Score = 172 bits (190), Expect = 4e-38 Identities = 401/596 (67%), Gaps = 14/596 (2%) Strand=Plus/Plus Query 27137 TCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACT 27196 |||| ||||| |||||||| |||| ||||| || ||||| || | | ||||| || | Sbjct 5808 TCTTGAGCGGCTCCACGTGGTCCAAGTAGATATGTGCGTCACCAATGACGTGGATGAAAT 5867 Query 27197 CTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGA 27256 | || | | || || ||||| || || ||| ||||| | | ||||||||||| Sbjct 5868 CACCAGCCTTCAGTCCCGTGACCTGTGCGATCGACCGTGTGAGCAAGGCGTAGCTGGCGA 5927 Query 27257 TGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 27316 | || || || || || ||||||||||| |||| | |||||| | ||| || || | Sbjct 5928 TATTGAATGGGACGCCCAGCCCCATGTCTGCCGAGCGCTGGTACATCTGGCAGCTAAGTT 5987 Query 27317 CTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCA 27376 | |||| || || || ||||| | |||||| ||||| || ||||| || Sbjct 5988 CACCATTAGCGACATAGAATTGACAAAACATGTGGCATGGAGGGAGTGCCATCTCCTTCA 6047 Query 27377 AGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTGTTCCTGA-- 27433 | || || |||||||| ||| ||||||||| | ||| ||| | ||||| ||| Sbjct 6048 AATCCGCTGGATTCCAGGCTGACATGATGATGCGACGGTCGTTCGGATTTGTT-TTGAGC 6106 Query 27434 -TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCAT 27491 || | |||| || || |||||||| || ||| || | ||| || | ||| Sbjct 6107 TTGTGAATCACGTCG----GCGAGCTGATCGACACCCTGGCCAGTGTAATCGGCGTGCAT 6162 Query 27492 GTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCC 27551 | ||||||| || |||||||| | ||| || ||||| || || ||||| ||||| || Sbjct 6163 ATTGGTGTACTTGGCGCCGAAATGTCGCCACTGAAACCCATATACGGGTCCAAGGTCACC 6222 Query 27552 CTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 27611 ||| | || |||| || | ||||||| | ||||| || || ||| ||||||| Sbjct 6223 AGTTTCACGGTTTTCGAGTCCAATGCTGTCCAAGTATTCTCTCGAGCCATTGCCGTCCCA 6282 Query 27612 GATCTTTACCCCCTTCTC--GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 27669 ||| | ||| || |||| | || |||| || ||| || |||| ||||||| Sbjct 6283 GATACGAATGTTCTTGTCCTGGAGTG-TC-TTGGCATTCGTGTCGCCACTGATGAACCAC 6340 Query 27670 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 || | ||| || | || | |||||| || | ||| ||||| | ||| ||||| Sbjct 6341 AGTAACTCTTCTGCAACTCCACGCCAAAACACTCGCTTCGTCGTTAAGAGCGGAAA 6396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369505939056680