Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 168 9e-37 >seq2 Length=1145976 Score = 168 bits (186), Expect = 9e-37 Identities = 408/609 (67%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 |||| || || ||||| ||||| || | |||||||| | ||| || | ||| || || | Sbjct 132297 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 132238 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 | ||||||| ||||| || ||||| || || | ||| || || | ||| || || | Sbjct 132237 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCG 132178 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGT 48312 ||||||| || || || || ||||||||||| || | || | || || || Sbjct 132177 AAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGC 132118 Query 48313 TGTGTATC-CACCGTTG---TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT 48368 | | || |||| | ||||||| |||||||| | || || || || ||||| Sbjct 132117 -GCGAGTCGCACCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCG 132059 Query 48369 ATAGCAT-TA--AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAA 48425 || ||| || ||| | || || || | ||||| | ||| || || || ||| Sbjct 132058 ATGGCACGTAGCAAGTG---GTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAAA 132002 Query 48426 AGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTC 48485 || |||| |||||||||||| |||||||| || ||||| ||||||||||| || | | Sbjct 132001 AGCGAGTACACTTCGGAGTGAATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGC 131942 Query 48486 GCTTCTGTGATCTGTACCTCCGTAC-AAAATCGTTCAGCCAAATTCTCATTTACTATTCC 48544 || || | | || || || ||| |||| || || | || || || || || || Sbjct 131941 GCCTCAGGCACTTGCACTTCACTACTGAAATTCATC-GCAAGGTTTTCGTTCACAATCCC 131883 Query 48545 ATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAG 48604 ||| || |||||||| || || || || || || || || | ||||||| |||| Sbjct 131882 ATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTCAT 131823 Query 48605 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGC 48664 || |||||| || | || | | ||| | ||||||||| |||||||| || Sbjct 131822 CTTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTCGC 131763 Query 48665 CTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724 || || || || ||||| ||| | || | |||||||||||| | ||||||| Sbjct 131762 TTCAGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAATCG 131703 Query 48725 ATTTGGATT 48733 |||||| || Sbjct 131702 ATTTGGGTT 131694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666368659200