Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 158 2e-33 >seq2 Length=1145976 Score = 158 bits (174), Expect = 2e-33 Identities = 407/611 (67%), Gaps = 17/611 (3%) Strand=Plus/Minus Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 |||| || || ||||| ||||| || | |||||||| | ||| || | ||| || || | Sbjct 132297 ACATCAAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGA 132238 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 | |||| |||||||| || |||||||| || | ||| || || | ||| || || | Sbjct 132237 AACTGAGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGGAGCAGAAGGAACCCG 132178 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT 46801 ||||||| || || || |||||||| ||||| | || | || | || |||| || Sbjct 132177 AAAAGAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATA---GGCAGCAG 132121 Query 46802 TATG--AATC-CACCT-TTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTT 46855 | | || |||| || | |||||| ||||| || | || || || || |||| Sbjct 132120 CGCGCGAGTCGCACCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTT 132061 Query 46856 CTATAGCATTAAAGAGAAAGtttttttCATCACTA---TCTTTAACATATGTATCTATTA 46912 | || ||| | | |||| | | || | ||||| | ||||| || || | Sbjct 132060 CGATGGCACGTA---GCAAGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCA 132004 Query 46913 AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATC 46972 |||| |||| ||| || |||||||||||||| || ||||| ||||||||||| || | Sbjct 132003 AAAGCGAGTACACTTCGGAGTGAATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGC 131944 Query 46973 TTGCTTCAGTAATCTGTACCTCTGTAC-AAAATCGTTCAGACAAATTCTCATTCACTATT 47031 || |||| | || || || ||| |||| || | | || || ||||| || Sbjct 131943 GCGCCTCAGGCACTTGCACTTCACTACTGAAATTCATC-GCAAGGTTTTCGTTCACAATC 131885 Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091 ||||| || |||||||| || ||||| || || || || || | ||| | | ||| Sbjct 131884 CCATCGCTGGCAGCAAAGAACGCCAAGACGTGCTTGATGAAGAAGCGTTCGTTGTCGGTC 131825 Query 47092 AGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGAC 47151 | || |||||| || | || | | ||| | ||||||||| ||||| || | Sbjct 131824 ATCTTGACCCAGTCCTTCAGGTCATGCACCAAATCCAGTTCTTCAGCGGTCCAAAAACTC 131765 Query 47152 GCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAAT 47211 || || || || || ||||| ||| | || | | |||||| || || | |||||| Sbjct 131764 GCTTCAGCCTTCTTGTACATGGCCCACACTTCCGGCTCTTGGATTGGGAACAACACAAAT 131705 Query 47212 CTATTTGGATT 47222 | |||||| || Sbjct 131704 CGATTTGGGTT 131694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931904729600