Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq78 104 5e-17 seq22 100 7e-16 >seq78 Length=145407 Score = 104 bits (114), Expect = 5e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 |||||||||||||| || | | || | |||||||| | || || || ||||| Sbjct 113023 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 113082 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||| || | | ||||||||||| || || || ||||| ||||| | || Sbjct 113083 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 113142 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||||| ||| || || || || || || || |||||||| ||||| || |||||| Sbjct 113143 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 113202 Query 152097 ACCTGCATTTTA 152108 | |||||| ||| Sbjct 113203 ATCTGCATCTTA 113214 >seq22 Length=480975 Score = 100 bits (110), Expect = 7e-16 Identities = 150/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| ||||||||||| || ||| || || | |||||||| | Sbjct 153793 CAAG-TGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTCAACGTGCGACCATCTTCCA 153851 Query 151957 --GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| || ||||| || | | ||| || || | | || |||||||| ||||| Sbjct 153852 ACTGCTTT--CCAGCGAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCTTATCTTG 153909 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||||| || ||| | || | ||| || ||| || || | |||||| ||||| Sbjct 153910 GATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCACATCCAAAGTAATCGTTTT 153969 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| | |||||||| |||| |||||| Sbjct 153970 CCCCGTCAACGTCTTCACAAAGATCTGCAT 153999 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965 || ||||| || || |||||||| ||| || || | ||||| || || ||||| | Sbjct 154031 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTT--C 154088 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | || ||||| || | ||||| || | | ||| |||||||| |||||||| ||||||| Sbjct 154089 CAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTT 154148 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 ||||| | || | ||| || || || || | || || || || ||||| | | Sbjct 154149 TGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGTCTTCCCCGTTAATG 154208 Query 152086 TCTTCACGAAGACCTGCAT 152104 ||||||| |||| |||||| Sbjct 154209 TCTTCACAAAGATCTGCAT 154227 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965 || ||||| || || |||||||| ||| || || | ||||| || || ||||| | Sbjct 171849 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGACCATCCTCAAGCTGCTTT--C 171792 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | || ||||| || | ||||| || | | ||| |||||||| |||||||| ||||||| Sbjct 171791 CAGCAAAGATGAGACGTTGCTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTTGTT 171732 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 ||||| | || | ||| || || || || | || || || || ||||| | | Sbjct 171731 TGACATTATCGATCGAGTCGGACGGTTCGACGTCCAATGTGATGGTCTTCCCCGTTAATG 171672 Query 152086 TCTTCACGAAGACCTGCAT 152104 ||||||| |||| |||||| Sbjct 171671 TCTTCACAAAGATCTGCAT 171653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153816660667880